Factsheet for GSMUA_Achr1P06360_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...	nucleus
GSMUA_Achr10P...
GSMUA_Achr1P06360_001	nucleus
GSMUA_Achr4P17850_001
GSMUA_Achr5P01690_001
GSMUA_Achr6P16850_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46830.1	GSMUA_Achr10P...	AT2G46830.1	14978263
AT2G46830.1	GSMUA_Achr1P06360_001	AT2G46830.1	14978263
AT2G46830.1	GSMUA_Achr10P...	AT2G46830.1	22715042
AT2G46830.1	GSMUA_Achr1P06360_001	AT2G46830.1	22715042
AT2G46830.1	GSMUA_Achr10P...	AT2G46830.1	22715042
AT2G46830.1	GSMUA_Achr1P06360_001	AT2G46830.1	22715042
AT2G46830.1	GSMUA_Achr4P17850_001	AT3G60250.1	10535927
AT2G46830.1	GSMUA_Achr4P17850_001	AT3G60250.1	14978263
AT2G46830.1	GSMUA_Achr4P17850_001	AT3G60250.1	9724822
AT2G46830.1	GSMUA_Achr10P...	AT5G67380.1	14978263
AT2G46830.1	GSMUA_Achr5P01690_001	AT5G67380.1	14978263
AT2G46830.1	GSMUA_Achr6P16850_001	AT5G67380.1	14978263
AT2G46830.1	GSMUA_Achr10P...	AT5G67380.1	9724822
AT2G46830.1	GSMUA_Achr5P01690_001	AT5G67380.1	9724822
AT2G46830.1	GSMUA_Achr6P16850_001	AT5G67380.1	9724822

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	9.5	82.14
GSMUA_Achr10P...	Banana	nucleus	36.5	43.87
CDX90004	Canola	nucleus	34.99	41.78
Bra033291.1-P	Field mustard	nucleus	34.57	41.35
CDX80750	Canola	nucleus	32.23	41.27
VIT_15s0048g02410.t01	Wine grape	nucleus	43.8	41.25
Os08t0157600-01	Rice	nucleus	40.77	41.17
KRH06339	Soybean	nucleus	42.29	40.93
Zm00001d049543_P003	Maize	nucleus	40.22	40.56
AT1G01060.7	Thale cress	nucleus	35.95	40.47
CDY61862	Canola	nucleus	32.64	40.44
CDY15205	Canola	nucleus	34.71	40.38
Bra030496.1-P	Field mustard	nucleus	32.51	40.27
GSMUA_AchrUn_...	Banana	nucleus	33.33	40.27
KRH68974	Soybean	nucleus	41.46	40.24
EES13385	Sorghum	nucleus	40.77	39.63
KRH47757	Soybean	nucleus	40.77	39.47
CDX80051	Canola	nucleus	29.75	39.13
HORVU7Hr1G070870.2	Barley	nucleus	38.57	39.05
AT2G46830.1	Thale cress	nucleus	31.68	37.83
TraesCS7A01G299400.3	Wheat	nucleus	38.84	37.8
Solyc10g005080.2.1	Tomato	nucleus	39.67	37.8
TraesCS7D01G295400.1	Wheat	nucleus	38.57	37.48
TraesCS7B01G188000.1	Wheat	nucleus	38.02	37.3
CDY64825	Canola	cytosol, nucleus, plastid	7.99	36.94
Zm00001d024546_P001	Maize	nucleus	32.51	35.6
KRG97259	Soybean	nucleus, plastid	40.08	35.53
GSMUA_Achr8P13440_001	Banana	nucleus	16.53	31.66
CDY41563	Canola	nucleus	29.34	28.32
GSMUA_Achr5P10280_001	Banana	nucleus	10.61	28.31
GSMUA_Achr7P04620_001	Banana	nucleus	10.06	27.34
GSMUA_Achr11P...	Banana	nucleus	17.77	26.99
GSMUA_AchrUn_...	Banana	nucleus	17.36	26.98
GSMUA_Achr7P17560_001	Banana	nucleus	9.78	23.67
GSMUA_Achr1P03720_001	Banana	nucleus	9.78	20.64
GSMUA_Achr3P17770_001	Banana	nucleus	6.06	18.41
GSMUA_Achr1P06480_001	Banana	plastid	10.33	17.44
GSMUA_Achr1P15370_001	Banana	mitochondrion	2.48	14.75
CDX80052	Canola	cytosol	0.41	1.39

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSMUA_Achr1G06360_001	EnsemblPlants:GSMUA_Achr1P06360_001	EnsemblPlants:GSMUA_Achr1T06360_001	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M0RXJ4
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF43
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00029638EA	SEG:seg

Description

Putative Protein LHY [Source:GMGC_GENE;Acc:GSMUA_Achr1G06360_001]

Coordinates

chr1:-:5109013..5116368

Molecular Weight (calculated)

79538.8 Da

IEP (calculated)

8.595

GRAVY (calculated)

-0.756

Length

726 amino acids

Sequence
(BLAST)

001: MEGNSSGDEM VVVKTRKPYT ITKQREKWTE EEHNRFLEAL KLYGRAWQRI EDHIGTKTAV QIRSHAQKFF TKLEKEALEK GIPIGQSHAI DIPPPRPKRK
101: PSSPYPRKSS TCCLTPGETI NGKSSRSMFL GANKVVDIKS GAPQEKFTAT QKLQNEEISE PSQSEVLNVF QDALSTSISS VNKSSSNHSK YMEILPTDEK
201: VDDKIASSKS SAPHEVDKEL KKNGKAFIGQ ETEGVQGNCT KPHINLALDK GESASKLHGL TSKDSVKGDQ TQPRHTMGRN GARNMHTEDS DGQNPTSVTG
301: QVEGHANDIS SMNPEASAIP VQNISRVNSM HHPFPAFAPF THFHSSQDAY RSFLNISSTF SSFILSTLLQ NPAVHAAARL AASSCPSAEV EASLQSTPVF
401: MAGERHINPA PGLEAIAAVT VAAAAAWWKA HGLLPWFPPA AFAFSPPNTT TIPSADTAQL HSHGCTLEKP LAEDQQIGKQ NLYEDLKPPR HSSKSLSLSL
501: SSSDSHDSGR GKNSSELEDS TSNKFKPLVA SGFDDSDNPR NKKKQDRSSC GSNTPSSSEV ETDNAGKHEK VNDEAKEAYF NNSAACETNQ CRFRSSGHMN
601: ESWKAVSEDG RLAFQQLFKR EVLPQSFPPP LDIAAATTIK KGETSKLLVD LNKNICSATD FNHLRGHTKE EVCIRSKDRI THGKLKFHQT GFKPYKRCSV
701: EAKENRAAAE ENNGKKKMRL QGEAST

Best Arabidopsis Sequence Match ( AT1G01060.4 )
(BLAST)

001: MDTNTSGEEL LAKARKPYTI TKQRERWTED EHERFLEALR LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEAEVKG IPVCQALDIE IPPPRPKRKP
101: NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK TSTGKENQDE NCSGVSTVNK YPLPTKVSGD IETSKTSTVD NAVQDVPKKN
201: KDKDGNDGTT VHSMQNYPWH FHADIVNGNI AKCPQNHPSG MVSQDFMFHP MREETHGHAN LQATTASATT TASHQAFPAC HSQDDYRSFL QISSTFSNLI
301: MSTLLQNPAA HAAATFAASV WPYASVGNSG DSSTPMSSSP PSITAIAAAT VAAATAWWAS HGLLPVCAPA PITCVPFSTV AVPTPAMTEM DTVENTQPFE
401: KQNTALQDQN LASKSPASSS DDSDETGVTK LNADSKTNDD KIEEVVVTAA VHDSNTAQKK NLVDRSSCGS NTPSGSDAET DALDKMEKDK EDVKETDENQ
501: PDVIELNNRK IKMRDNNSNN NATTDSWKEV SEEGRIAFQA LFARERLPQS FSPPQVAENV NRKQSDTSMP LAPNFKSQDS CAADQEGVVM IGVGTCKSLK
601: TRQTGFKPYK RCSMEVKESQ VGNINNQSDE KVCKRLRLEG EAST

Arabidopsis Description

LHYLHY1 [Source:UniProtKB/TrEMBL;Acc:A0A178W761]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.