CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71824
CDX77739
CDX80051	nucleus
CDX80052	nucleus
CDX90462
CDY09612
CDY28980
CDY40582
CDY41181
CDY41563	nucleus
CDY64765
CDY70654
CDY71648

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46830.1	CDX80051	AT2G46830.1	14978263
AT2G46830.1	CDX80052	AT2G46830.1	14978263
AT2G46830.1	CDY41563	AT2G46830.1	14978263
AT2G46830.1	CDX80051	AT2G46830.1	22715042
AT2G46830.1	CDX80052	AT2G46830.1	22715042
AT2G46830.1	CDY41563	AT2G46830.1	22715042
AT2G46830.1	CDX80051	AT2G46830.1	22715042
AT2G46830.1	CDX80052	AT2G46830.1	22715042
AT2G46830.1	CDY41563	AT2G46830.1	22715042
AT2G46830.1	CDX71824	AT3G60250.1	10535927
AT2G46830.1	CDY41181	AT3G60250.1	10535927
AT2G46830.1	CDY64765	AT3G60250.1	10535927
AT2G46830.1	CDX71824	AT3G60250.1	14978263
AT2G46830.1	CDY41181	AT3G60250.1	14978263
AT2G46830.1	CDY64765	AT3G60250.1	14978263
AT2G46830.1	CDX71824	AT3G60250.1	9724822
AT2G46830.1	CDY41181	AT3G60250.1	9724822
AT2G46830.1	CDY64765	AT3G60250.1	9724822
AT2G46830.1	CDX90462	AT4G17640.1	9724822
AT2G46830.1	CDY09612	AT4G17640.1	9724822
AT2G46830.1	CDX77739	AT5G47080.1	9724822
AT2G46830.1	CDY28980	AT5G47080.1	9724822
AT2G46830.1	CDY40582	AT5G47080.1	9724822
AT2G46830.1	CDY70654	AT5G67380.1	14978263
AT2G46830.1	CDY71648	AT5G67380.1	14978263
AT2G46830.1	CDY70654	AT5G67380.1	9724822
AT2G46830.1	CDY71648	AT5G67380.1	9724822

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41563	Canola	nucleus	100.0	28.72
CDY64825	Canola	cytosol, nucleus, plastid	1.39	1.91
CDY26997	Canola	nucleus	1.85	1.25
CDY38566	Canola	nucleus	1.85	1.25
CDY19206	Canola	nucleus	1.85	1.1
CDY10419	Canola	nucleus	1.85	0.75
CDY41299	Canola	nucleus	0.93	0.7
CDY27841	Canola	nucleus	0.93	0.7
CDY41598	Canola	nucleus	0.93	0.66
CDY44719	Canola	nucleus	0.93	0.66
CDY52837	Canola	nucleus	0.93	0.65
CDX80051	Canola	nucleus	1.39	0.54
KRH06339	Soybean	nucleus	1.85	0.53
KRH47757	Soybean	nucleus	1.85	0.53
CDX80750	Canola	nucleus	1.39	0.53
CDY61862	Canola	nucleus	1.39	0.51
CDX90004	Canola	nucleus	1.39	0.49
CDY15205	Canola	nucleus	1.39	0.48
Zm00001d024546_P001	Maize	nucleus	1.39	0.45
HORVU7Hr1G070870.2	Barley	nucleus	1.39	0.42
Os08t0157600-01	Rice	nucleus	1.39	0.42
Zm00001d049543_P003	Maize	nucleus	1.39	0.42
GSMUA_Achr1P06360_001	Banana	nucleus	1.39	0.41
EES13385	Sorghum	nucleus	1.39	0.4
KRH68974	Soybean	nucleus	1.39	0.4
Solyc10g005080.2.1	Tomato	nucleus	1.39	0.39
KRG97259	Soybean	nucleus, plastid	1.39	0.37
GSMUA_Achr10P...	Banana	nucleus	0.93	0.33
AT2G46830.1	Thale cress	nucleus	0.93	0.33
CDY56155	Canola	nucleus	0.46	0.31
CDY51831	Canola	vacuole	0.46	0.29
VIT_15s0048g02410.t01	Wine grape	nucleus	0.93	0.26
TraesCS7B01G188000.1	Wheat	nucleus	0.46	0.14
TraesCS7A01G299400.3	Wheat	nucleus	0.46	0.13
TraesCS7D01G295400.1	Wheat	nucleus	0.46	0.13
PGSC0003DMT400029394	Potato	nucleus	0.0	0.0
CDX70341	Canola	nucleus	0.0	0.0
CDX69388	Canola	nucleus	0.0	0.0
CDX80840	Canola	nucleus	0.0	0.0
CDX70747	Canola	nucleus	0.0	0.0
CDX78737	Canola	nucleus	0.0	0.0
CDY26169	Canola	nucleus	0.0	0.0
CDX85462	Canola	nucleus	0.0	0.0
CDX90039	Canola	plastid	0.0	0.0
CDY02714	Canola	nucleus	0.0	0.0
CDY48515	Canola	nucleus	0.0	0.0
CDY07188	Canola	nucleus	0.0	0.0
CDY11228	Canola	nucleus	0.0	0.0
CDY15171	Canola	nucleus	0.0	0.0
CDY16939	Canola	nucleus	0.0	0.0

Protein Annotations

KEGG:00190+3.6.1.1	Gene3D:3.90.80.10	MapMan:35.1	GO:A0A078CTJ4	EnsemblPlants:CDX80052	ProteinID:CDX80052
ProteinID:CDX80052.1	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004427	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006796	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00132938001	InterPro:IPR036649	HAMAP:MF_00209
PFAM:PF00719	ScanProsite:PS00387	PANTHER:PTHR10286	PANTHER:PTHR10286:SF10	InterPro:Pyrophosphatase	InterPro:Pyrophosphatase_sf
SUPFAM:SSF50324	UniParc:UPI0001B6400F	SEG:seg	:	:	:

Description

BnaA05g01040D

Coordinates

chrLK031819:+:1572941..1574816

Molecular Weight (calculated)

24934.9 Da

IEP (calculated)

5.196

GRAVY (calculated)

-0.428

Length

216 amino acids

Sequence
(BLAST)

001: MSEETYEETM ESNESPRPAP KLNERILSTL SKRSVAAHPW HDLEIGPEAP LVFNVVVEIT KGSKVKYELD KKTGLIKVDR ILYSSVVYPH NYGFIPRTLC
101: EDNDPLDVLV LMQEPVLPGC FLRARAIGLM PMIDQGEMDD KIIAVCADDP EYKHFTDIKQ LAPHRLSEIR RFFEDYKKNE HKEVAVNDFL PSEKAHEAIQ
201: YSMDLYAEYI LHSLRR

Best Arabidopsis Sequence Match ( AT2G46860.1 )
(BLAST)

001: MSEEAYEETQ ESSQSPRPVP KLNERILSTL SRRSVAAHPW HDLEIGPEAP LVFNVVVEIT KGSKVKYELD KKTGLIKVDR ILYSSVVYPH NYGFIPRTLC
101: EDNDPLDVLV LMQEPVLPGC FLRARAIGLM PMIDQGEKDD KIIAVCADDP EYKHFTDIKQ LAPHRLQEIR RFFEDYKKNE NKKVAVNDFL PSESAHEAIQ
201: YSMDLYAEYI LHTLRR

Arabidopsis Description

PPA3PPa3 [Source:UniProtKB/TrEMBL;Acc:A0A178VZ15]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.