CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033257.1-P	Field mustard	plastid	100.0	100.0
CDY15171	Canola	nucleus	95.56	95.56
AT1G01520.3	Thale cress	plastid	71.48	67.25
GSMUA_Achr7P04620_001	Banana	nucleus	54.44	55.06
CDY07188	Canola	nucleus	57.41	52.01
KRH40382	Soybean	nucleus	54.07	50.87
CDY48515	Canola	nucleus	57.41	50.65
VIT_15s0046g02260.t01	Wine grape	nucleus	60.74	50.0
KRH00849	Soybean	nucleus	56.3	49.35
CDY52837	Canola	nucleus	54.81	48.37
CDY41299	Canola	nucleus	50.0	47.54
CDX80840	Canola	nucleus	47.04	47.04
CDY56155	Canola	nucleus	55.56	46.44
PGSC0003DMT400000546	Potato	nucleus	54.44	46.23
CDY27841	Canola	nucleus	48.89	46.15
CDY11228	Canola	nucleus	46.3	45.29
CDX70341	Canola	nucleus	47.04	44.56
Solyc01g095030.2.1	Tomato	nucleus	54.07	44.11
CDY44719	Canola	nucleus	48.89	43.42
CDY51831	Canola	vacuole	55.93	43.39
CDY41598	Canola	nucleus	48.15	43.19
CDY10419	Canola	nucleus	46.3	23.41
CDY16939	Canola	nucleus	25.56	23.0
CDY38566	Canola	nucleus	26.3	22.12
CDY26997	Canola	nucleus	25.93	21.81
CDX69388	Canola	nucleus	26.67	19.25
CDY02714	Canola	nucleus	25.93	18.97
CDX85462	Canola	nucleus	25.56	18.5
CDY26169	Canola	nucleus	21.48	18.47
CDX70747	Canola	nucleus	24.44	18.28
CDX78737	Canola	nucleus	24.44	18.08
CDY19206	Canola	nucleus	22.59	16.85
CDX80051	Canola	nucleus	28.52	13.95
CDX80750	Canola	nucleus	25.19	11.99
CDX90004	Canola	nucleus	26.67	11.84
CDY61862	Canola	nucleus	25.19	11.6
CDY15205	Canola	nucleus	26.67	11.54
CDY41563	Canola	nucleus	28.15	10.11
CDY64825	Canola	cytosol, nucleus, plastid	1.48	2.55
CDX80052	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.6.2	GO:A0A078DNG7	EnsemblPlants:CDX90039	ProteinID:CDX90039
ProteinID:CDX90039.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00150541001
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR12802	PANTHER:PTHR12802:SF83	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI0002545320	:	:	:	:	:

Description

BnaA10g00430D

Coordinates

chrLK031861:+:1371490..1372952

Molecular Weight (calculated)

31013.2 Da

IEP (calculated)

9.907

GRAVY (calculated)

-0.674

Length

270 amino acids

Sequence
(BLAST)

001: MNMSLPGFST TLPHSKTTMP VSARSHTMSF SEDPTKKIRK PYTITKSREN WTEQEHDKFI EALHLFDRDW KKIEAFVGSK TVIQIRSHAQ KYFLKVQKNG
101: TNEHLPPPRP KRKANHPYPQ KASKSVALTT SNALLEHEYL YPTDPQPVIS TPNHGLMRCN VITPIPVIKE ELGVLENCCS TSRSRSIRDK MRTRTVTETD
201: DQRVMPNFAE VYSFIGSVFD PKTTGHVQRL KQMDPINLET VLLLMKNLSV NLSSPEFEEQ RRLISSYNSE

Best Arabidopsis Sequence Match ( AT1G01520.1 )
(BLAST)

001: MVTVNPSQAH CLPMKMSLPG FNTLPHTATT IPVSIRSNRT MSFFEDPTKK VRKPYTITKS RENWTEQEHD KFLEALHLFD RDWKKIKAFV GSKTVIQIRS
101: HAQKYFLKVQ KNGTKEHLPP PRPKRKANHP YPQKAPKFTL SSSNALFQHD YLYNTNSHPV ISTTRKHGLV HCDVSIPSSV IKEEFGVSEN CCSTSSSRDK
201: QRTRIVTETN DQESCGKPHR VAPNFAEVYN FIGSVFDPKT TGHVKRLKEM DPINLETVLL LMKNLSVNLT SPEFDEQRKL ISSYNAS

Arabidopsis Description

ASG4 [Source:UniProtKB/TrEMBL;Acc:A0A178W835]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.