Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034074.1-P | Field mustard | nucleus | 88.38 | 95.44 |
| AT3G09600.7 | Thale cress | nucleus | 84.86 | 80.87 |
| CDY44719 | Canola | nucleus | 83.1 | 77.63 |
| CDY41598 | Canola | nucleus | 80.99 | 76.41 |
| CDX70341 | Canola | nucleus | 63.38 | 63.16 |
| CDX80840 | Canola | nucleus | 59.51 | 62.59 |
| CDY11228 | Canola | nucleus | 60.56 | 62.32 |
| KRH32383 | Soybean | plastid | 63.73 | 61.56 |
| VIT_08s0040g03220.t01 | Wine grape | nucleus | 60.21 | 60.42 |
| PGSC0003DMT400028711 | Potato | nucleus | 59.86 | 59.44 |
| Solyc10g084370.1.1 | Tomato | nucleus | 60.92 | 58.45 |
| KRH19794 | Soybean | nucleus | 61.62 | 58.14 |
| KRH67632 | Soybean | nucleus | 60.56 | 57.53 |
| KRG95914 | Soybean | nucleus | 58.1 | 57.09 |
| CDX90039 | Canola | plastid | 47.54 | 50.0 |
| CDY15171 | Canola | nucleus | 46.83 | 49.26 |
| CDY52837 | Canola | nucleus | 48.94 | 45.42 |
| CDY56155 | Canola | nucleus | 50.0 | 43.96 |
| CDY27841 | Canola | nucleus | 42.61 | 42.31 |
| CDY07188 | Canola | nucleus | 43.66 | 41.61 |
| CDY48515 | Canola | nucleus | 44.37 | 41.18 |
| CDY51831 | Canola | vacuole | 50.0 | 40.8 |
| CDY10419 | Canola | nucleus | 61.97 | 32.96 |
| CDY16939 | Canola | nucleus | 25.0 | 23.67 |
| CDY38566 | Canola | nucleus | 24.65 | 21.81 |
| CDY26997 | Canola | nucleus | 23.94 | 21.18 |
| CDX69388 | Canola | nucleus | 26.06 | 19.79 |
| CDY02714 | Canola | nucleus | 25.35 | 19.51 |
| CDX70747 | Canola | nucleus | 24.65 | 19.39 |
| CDX85462 | Canola | nucleus | 25.0 | 19.03 |
| CDY26169 | Canola | nucleus | 20.77 | 18.79 |
| CDX78737 | Canola | nucleus | 23.59 | 18.36 |
| CDY19206 | Canola | nucleus | 21.83 | 17.13 |
| CDX80051 | Canola | nucleus | 24.3 | 12.5 |
| CDX90004 | Canola | nucleus | 26.06 | 12.17 |
| CDY15205 | Canola | nucleus | 26.06 | 11.86 |
| CDX80750 | Canola | nucleus | 23.24 | 11.64 |
| CDY61862 | Canola | nucleus | 23.59 | 11.43 |
| CDY41563 | Canola | nucleus | 24.65 | 9.31 |
| CDY64825 | Canola | cytosol, nucleus, plastid | 1.76 | 3.18 |
| CDX80052 | Canola | cytosol | 0.7 | 0.93 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | MapMan:27.1.6.2 | GO:A0A078HVA9 | UniProt:A0A078HVA9 | EnsemblPlants:CDY41299 |
| ProteinID:CDY41299 | ProteinID:CDY41299.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00072845001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR12802 | PANTHER:PTHR12802:SF81 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 |
| UniParc:UPI0004EF2290 | SEG:seg | : | : | : | : |
Description
BnaA01g32200DBnaA01g32200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HVA9]
Coordinates
chrLK032495:+:17340..19205
Molecular Weight (calculated)
31715.4 Da
IEP (calculated)
9.512
GRAVY (calculated)
-0.564
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSTSRNQT AAEAQPSTDV VAEGSSKKVR KPYTITKSRE SWTEEEHDKF LEALQLFDRD WKKIEDFVGS KTVIQIRSHA QKYFLKVQKN GTLAHVPPPR
101: PKRKAAHPYP QKASKSAQMQ LQVSTSWDDA SMLLNRVISP HQELATFRGP QGTLFPDIGP KGILNVSSPS TSGLGSSSRT FSGSEIVAKQ PPVLHVVPDF
201: SEVYNFIGSV FDPETRLDHV EKLKEMDPIN FETVLLLMRN LTFNLSNPEF ESARKVLSSH EVNTELPSVT TGSFFENSKS YKSS
101: PKRKAAHPYP QKASKSAQMQ LQVSTSWDDA SMLLNRVISP HQELATFRGP QGTLFPDIGP KGILNVSSPS TSGLGSSSRT FSGSEIVAKQ PPVLHVVPDF
201: SEVYNFIGSV FDPETRLDHV EKLKEMDPIN FETVLLLMRN LTFNLSNPEF ESARKVLSSH EVNTELPSVT TGSFFENSKS YKSS
001: MSSSPSRNPT NAEAPPPPPT STDAVAEGSS KKVRKPYTIT KSRESWTEEE HDKFLEALQL FDRDWKKIED FVGSKTVIQI RSHAQKYFLK VQKNGTLAHV
101: PPPRPKRKAA HPYPQKASKN AQMPLQVSTS FTTTRNGDMP GYASWDDASM LLNRVISPQH ELATLRGAEA DIGSKGLLNV SSPSTSGMGS SSRTVSGSEI
201: VRKAKQPPVL HGVPDFAEVY NFIGSVFDPE TRGHVEKLKE MDPINFETVL LLMRNLTVNL SNPDLESTRK VLLSYDNVTT ELPSVVSLVK NSTSDKSA
101: PPPRPKRKAA HPYPQKASKN AQMPLQVSTS FTTTRNGDMP GYASWDDASM LLNRVISPQH ELATLRGAEA DIGSKGLLNV SSPSTSGMGS SSRTVSGSEI
201: VRKAKQPPVL HGVPDFAEVY NFIGSVFDPE TRGHVEKLKE MDPINFETVL LLMRNLTVNL SNPDLESTRK VLLSYDNVTT ELPSVVSLVK NSTSDKSA
Arabidopsis Description
RVE8Protein REVEILLE 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWU3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.