Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26169 | Canola | nucleus | 76.8 | 88.53 |
| AT3G10113.1 | Thale cress | nucleus | 63.26 | 68.15 |
| AT1G18330.2 | Thale cress | nucleus | 66.85 | 65.05 |
| CDY16939 | Canola | nucleus | 30.66 | 37.0 |
| CDX70747 | Canola | nucleus | 31.77 | 31.86 |
| CDY02714 | Canola | nucleus | 32.32 | 31.71 |
| CDY38566 | Canola | nucleus | 27.62 | 31.15 |
| CDX78737 | Canola | nucleus | 31.22 | 30.96 |
| CDY26997 | Canola | nucleus | 27.35 | 30.84 |
| CDX85462 | Canola | nucleus | 31.77 | 30.83 |
| KRH38938 | Soybean | nucleus | 39.23 | 30.47 |
| CDX69388 | Canola | nucleus | 31.22 | 30.21 |
| KRH09476 | Soybean | nucleus | 38.95 | 29.56 |
| Zm00001d014863_P002 | Maize | nucleus | 30.39 | 25.46 |
| KXG20957 | Sorghum | nucleus | 30.11 | 25.12 |
| Os06t0728700-01 | Rice | nucleus | 31.22 | 25.06 |
| TraesCS7B01G478200.1 | Wheat | nucleus | 31.22 | 23.4 |
| CDX90039 | Canola | plastid | 16.85 | 22.59 |
| TraesCS7D01G540700.3 | Wheat | nucleus | 30.11 | 22.57 |
| HORVU7Hr1G121210.4 | Barley | nucleus | 30.11 | 22.2 |
| CDY41299 | Canola | nucleus | 17.13 | 21.83 |
| CDY15171 | Canola | nucleus | 16.02 | 21.48 |
| CDY07188 | Canola | nucleus | 17.68 | 21.48 |
| TraesCS7A01G553800.1 | Wheat | nucleus | 30.11 | 21.41 |
| CDX80840 | Canola | nucleus | 15.75 | 21.11 |
| CDY48515 | Canola | nucleus | 17.13 | 20.26 |
| CDX70341 | Canola | nucleus | 15.75 | 20.0 |
| CDY41598 | Canola | nucleus | 16.57 | 19.93 |
| CDY11228 | Canola | nucleus | 15.19 | 19.93 |
| CDY56155 | Canola | nucleus | 17.68 | 19.81 |
| CDY44719 | Canola | nucleus | 16.57 | 19.74 |
| CDY52837 | Canola | nucleus | 16.57 | 19.61 |
| CDY51831 | Canola | vacuole | 17.68 | 18.39 |
| CDY27841 | Canola | nucleus | 13.81 | 17.48 |
| CDX80750 | Canola | nucleus | 27.35 | 17.46 |
| CDY61862 | Canola | nucleus | 27.9 | 17.24 |
| CDX80051 | Canola | nucleus | 25.41 | 16.67 |
| CDX90004 | Canola | nucleus | 27.62 | 16.45 |
| CDY15205 | Canola | nucleus | 28.18 | 16.35 |
| CDY41563 | Canola | nucleus | 26.24 | 12.63 |
| CDY64825 | Canola | cytosol, nucleus, plastid | 5.25 | 12.1 |
| CDY10419 | Canola | nucleus | 17.13 | 11.61 |
| CDX80052 | Canola | cytosol | 1.1 | 1.85 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | GO:A0A078G1M5 | UniProt:A0A078G1M5 | EnsemblPlants:CDY19206 | ProteinID:CDY19206 |
| ProteinID:CDY19206.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00006503001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR12802 | PANTHER:PTHR12802:SF86 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 |
| UniParc:UPI0004EDF953 | SEG:seg | : | : | : | : |
Description
BnaC05g14070DBnaC05g14070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1M5]
Coordinates
chrLK032093:-:197120..199138
Molecular Weight (calculated)
39888.5 Da
IEP (calculated)
9.386
GRAVY (calculated)
-0.767
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPDRSEDV SSNVENGGCN SNEGTTNHET SSDRIANAAK VRKPYTVTKQ REKWSEAEHE RFLEAINLYG RAWRQIQEHI GTKTAVQIRS HAQKFFSKVA
101: READSGSDGS VQTVVIPPPR PKRKPTHPYP RKSPVPYSQS PSSAMEKGTK SPTSVLSPFD SDDQTNRCSS PNSCTKDDAV TGSRPTSSIM LFGKIVLVGG
201: ESHKTSSSRE DGVDHKSMTG QDSRHVDTVL SLGVWDTSCT GSNAFGSVTE VSENLEKSAE ARKRLTSLEK QEPCYRANGF RPYKRCLSER EVTSSLSLVA
301: SEEEGSRRRA RSLDLSKVMD QKRVKINQLN KPTAKAQVGM DVWVGFEPVF TGSGFFKSCI FL
101: READSGSDGS VQTVVIPPPR PKRKPTHPYP RKSPVPYSQS PSSAMEKGTK SPTSVLSPFD SDDQTNRCSS PNSCTKDDAV TGSRPTSSIM LFGKIVLVGG
201: ESHKTSSSRE DGVDHKSMTG QDSRHVDTVL SLGVWDTSCT GSNAFGSVTE VSENLEKSAE ARKRLTSLEK QEPCYRANGF RPYKRCLSER EVTSSLSLVA
301: SEEEGSRRRA RSLDLSKVMD QKRVKINQLN KPTAKAQVGM DVWVGFEPVF TGSGFFKSCI FL
001: MAAEDRSEEL SSNVENGSCN SNEGINPETS SHWIENVVKV RKPYTVTKQR EKWSEEEHDR FLEAIKLYGR GWRQIQEHIG TKTAVQIRSH AQKFFSKMAQ
101: EADSRSEGSV KAIVIPPPRP KRKPAHPYPR KSPVPYTQSP PPNLSAMEKG TKSPTSVLSS FGSEDQVNRC SSPNSCTSDI QSIGATSIDK KNNYTTSKQP
201: FKDDSDIGST PISSITLFGK IVLVAEESHK PSSYNDDDLK QMTCQENHYS GMLVDTNLSL GVWETFCTGS NAFGSVTEAS ENLEKSAEPI SSSWKRLSSL
301: EKQGSCNPVN ASGFRPYKRC LSEREVTSSL TLVASDEKKS QRARIC
101: EADSRSEGSV KAIVIPPPRP KRKPAHPYPR KSPVPYTQSP PPNLSAMEKG TKSPTSVLSS FGSEDQVNRC SSPNSCTSDI QSIGATSIDK KNNYTTSKQP
201: FKDDSDIGST PISSITLFGK IVLVAEESHK PSSYNDDDLK QMTCQENHYS GMLVDTNLSL GVWETFCTGS NAFGSVTEAS ENLEKSAEPI SSSWKRLSSL
301: EKQGSCNPVN ASGFRPYKRC LSEREVTSSL TLVASDEKKS QRARIC
Arabidopsis Description
RVE7Protein REVEILLE 7 [Source:UniProtKB/Swiss-Prot;Acc:B3H5A8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.