Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008563.1-P | Field mustard | nucleus | 94.65 | 99.72 |
| CDY16939 | Canola | nucleus | 77.01 | 96.0 |
| CDY02714 | Canola | nucleus | 83.96 | 85.09 |
| CDX85462 | Canola | nucleus | 81.82 | 82.04 |
| CDX70747 | Canola | nucleus | 77.27 | 80.06 |
| AT5G17300.1 | Thale cress | nucleus | 80.75 | 78.04 |
| CDX78737 | Canola | nucleus | 74.87 | 76.71 |
| CDY38566 | Canola | nucleus | 33.42 | 38.94 |
| CDY26997 | Canola | nucleus | 32.89 | 38.32 |
| Solyc02g036370.2.1 | Tomato | nucleus | 44.12 | 35.56 |
| PGSC0003DMT400055263 | Potato | nucleus | 45.19 | 35.5 |
| CDY26169 | Canola | nucleus | 28.88 | 34.39 |
| CDY19206 | Canola | nucleus | 30.21 | 31.22 |
| CDX90039 | Canola | plastid | 19.25 | 26.67 |
| CDY07188 | Canola | nucleus | 20.86 | 26.17 |
| CDY41299 | Canola | nucleus | 19.79 | 26.06 |
| CDX80840 | Canola | nucleus | 18.45 | 25.56 |
| CDY15171 | Canola | nucleus | 18.45 | 25.56 |
| CDY11228 | Canola | nucleus | 17.91 | 24.28 |
| CDY52837 | Canola | nucleus | 19.79 | 24.18 |
| CDY48515 | Canola | nucleus | 19.79 | 24.18 |
| CDY41598 | Canola | nucleus | 19.25 | 23.92 |
| CDY44719 | Canola | nucleus | 18.98 | 23.36 |
| CDY56155 | Canola | nucleus | 20.05 | 23.22 |
| CDX70341 | Canola | nucleus | 17.65 | 23.16 |
| CDY27841 | Canola | nucleus | 16.58 | 21.68 |
| CDY51831 | Canola | vacuole | 20.05 | 21.55 |
| CDX80051 | Canola | nucleus | 27.54 | 18.66 |
| CDX90004 | Canola | nucleus | 29.41 | 18.09 |
| CDX80750 | Canola | nucleus | 27.27 | 17.99 |
| CDY15205 | Canola | nucleus | 29.14 | 17.47 |
| CDY61862 | Canola | nucleus | 27.01 | 17.24 |
| CDY41563 | Canola | nucleus | 27.27 | 13.56 |
| CDY10419 | Canola | nucleus | 17.65 | 12.36 |
| CDY64825 | Canola | cytosol, nucleus, plastid | 4.28 | 10.19 |
| CDX80052 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | GO:A0A078C2V2 | EnsemblPlants:CDX69388 | ProteinID:CDX69388 | ProteinID:CDX69388.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00135353001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR12802 |
| PANTHER:PTHR12802:SF60 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EEFF39 |
| SEG:seg | : | : | : | : | : |
Description
BnaA10g17370D
Coordinates
chrLK031790:+:14756..16911
Molecular Weight (calculated)
41357.4 Da
IEP (calculated)
8.925
GRAVY (calculated)
-0.872
Length
374 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSPLTTNV QGAKTKIQLS DQEGNDYAPK VRKPYTITKE RERWTDEEHN KFVEALKLHG RAWRKIEEHV GTKTAVQIRS HAQKFFSKVA KEASGGNGSS
101: LEPILIPPPR PKRKPMHPYP RKLGNEGDQA SRSVSPSERD NGSPTSVLST VGSEALGSSD SHSPNRSLSP VSSASPPAAP LATTENAPEE LETSATKLEL
201: FPRESLVKEP KKQSLRLFGN TVLVSDSGVS SSLTTYCKSP IIQPLPRKLS RSETFPMVIN PQEKLLSCWI QQVPPKQEEV ENRCSDSEKA VQNEGSSTGS
301: NTGSVDDTGH TDKSSEPPET MVCRWEFKAS ERSAFSELRR KNSESNSRGF GPYKKRKMVI EAEQEEQEQI RLCL
101: LEPILIPPPR PKRKPMHPYP RKLGNEGDQA SRSVSPSERD NGSPTSVLST VGSEALGSSD SHSPNRSLSP VSSASPPAAP LATTENAPEE LETSATKLEL
201: FPRESLVKEP KKQSLRLFGN TVLVSDSGVS SSLTTYCKSP IIQPLPRKLS RSETFPMVIN PQEKLLSCWI QQVPPKQEEV ENRCSDSEKA VQNEGSSTGS
301: NTGSVDDTGH TDKSSEPPET MVCRWEFKAS ERSAFSELRR KNSESNSRGF GPYKKRKMVI EAEQEEQEQI RLCL
001: MASSPLTANV QGTNASLRNR DEETADKQIQ FNDQSFGGND YAPKVRKPYT ITKERERWTD EEHKKFVEAL KLYGRAWRRI EEHVGSKTAV QIRSHAQKFF
101: SKVAREATGG DGSSVEPIVI PPPRPKRKPA HPYPRKFGNE ADQTSRSVSP SERDTQSPTS VLSTVGSEAL CSLDSSSPNR SLSPVSSASP PAALTTTANA
201: PEELETLKLE LFPSERLLNR ESSIKEPTKQ SLKLFGKTVL VSDSGMSSSL TTSTYCKSPI QPLPRKLSSS KTLPIIRNSQ EELLSCWIQV PLKQEDVENR
301: CLDSGKAVQN EGSSTGSNTG SVDDTGHTEK TTEPETMLCQ WEFKPSERSA FSELRRTNSE SNSRGFGPYK KRKMVTEEEE HEIHLHL
101: SKVAREATGG DGSSVEPIVI PPPRPKRKPA HPYPRKFGNE ADQTSRSVSP SERDTQSPTS VLSTVGSEAL CSLDSSSPNR SLSPVSSASP PAALTTTANA
201: PEELETLKLE LFPSERLLNR ESSIKEPTKQ SLKLFGKTVL VSDSGMSSSL TTSTYCKSPI QPLPRKLSSS KTLPIIRNSQ EELLSCWIQV PLKQEDVENR
301: CLDSGKAVQN EGSSTGSNTG SVDDTGHTEK TTEPETMLCQ WEFKPSERSA FSELRRTNSE SNSRGFGPYK KRKMVTEEEE HEIHLHL
Arabidopsis Description
RVE1Protein REVEILLE 1 [Source:UniProtKB/Swiss-Prot;Acc:F4KGY6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.