Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003117.1-P | Field mustard | nucleus | 99.67 | 99.67 |
| CDY27841 | Canola | nucleus | 88.89 | 95.1 |
| CDY56155 | Canola | nucleus | 88.89 | 84.21 |
| AT5G52660.2 | Thale cress | nucleus | 87.25 | 80.66 |
| CDY51831 | Canola | vacuole | 88.89 | 78.16 |
| KRH08856 | Soybean | nucleus | 59.8 | 60.8 |
| TraesCS6D01G239800.1 | Wheat | nucleus | 55.88 | 59.79 |
| TraesCS6B01G266800.3 | Wheat | nucleus | 55.88 | 59.79 |
| HORVU6Hr1G066000.1 | Barley | nucleus | 55.23 | 59.72 |
| KRH35235 | Soybean | nucleus | 60.78 | 59.62 |
| KXG31009 | Sorghum | nucleus | 54.25 | 59.07 |
| Os02t0680700-01 | Rice | nucleus | 55.88 | 58.76 |
| Zm00001d017609_P011 | Maize | nucleus | 52.29 | 58.61 |
| Solyc06g036300.2.1 | Tomato | nucleus, plastid | 57.52 | 58.47 |
| GSMUA_Achr5P10280_001 | Banana | nucleus | 50.33 | 56.62 |
| KRG91589 | Soybean | nucleus | 60.78 | 56.53 |
| VIT_16s0050g01180.t01 | Wine grape | nucleus | 61.44 | 55.79 |
| CDX90039 | Canola | plastid | 48.37 | 54.81 |
| CDY15171 | Canola | nucleus | 48.37 | 54.81 |
| GSMUA_Achr7P17560_001 | Banana | nucleus | 52.61 | 53.67 |
| PGSC0003DMT400074344 | Potato | plastid | 50.65 | 53.63 |
| KRH38371 | Soybean | nucleus | 59.15 | 51.27 |
| HORVU0Hr1G031850.1 | Barley | nucleus, plastid | 55.23 | 50.75 |
| CDX80840 | Canola | nucleus | 44.44 | 50.37 |
| CDY07188 | Canola | nucleus | 48.69 | 50.0 |
| TraesCS6A01G258600.2 | Wheat | nucleus | 55.56 | 49.71 |
| Os06t0669700-01 | Rice | nucleus | 39.87 | 49.39 |
| CDY41299 | Canola | nucleus | 45.42 | 48.94 |
| CDY11228 | Canola | nucleus | 44.12 | 48.91 |
| CDX70341 | Canola | nucleus | 45.42 | 48.77 |
| HORVU7Hr1G001830.3 | Barley | nucleus | 43.14 | 48.71 |
| Os06t0105800-02 | Rice | nucleus | 47.39 | 48.66 |
| CDY44719 | Canola | nucleus | 48.04 | 48.36 |
| CDY41598 | Canola | nucleus | 47.06 | 47.84 |
| TraesCS7D01G014900.2 | Wheat | nucleus | 44.12 | 47.7 |
| TraesCS7A01G017600.1 | Wheat | nucleus | 43.14 | 47.48 |
| CDY48515 | Canola | nucleus | 47.39 | 47.39 |
| KXG20579 | Sorghum | nucleus | 51.63 | 46.61 |
| TraesCS4A01G474100.2 | Wheat | nucleus | 46.08 | 45.63 |
| EER89043 | Sorghum | nucleus | 46.73 | 45.11 |
| TraesCS7A01G470700.1 | Wheat | nucleus | 50.0 | 45.0 |
| TraesCS7D01G458000.1 | Wheat | nucleus | 50.0 | 44.87 |
| TraesCS7B01G372500.1 | Wheat | nucleus | 50.0 | 44.87 |
| Zm00001d046974_P002 | Maize | nucleus | 48.37 | 43.92 |
| GSMUA_Achr1P03720_001 | Banana | nucleus | 47.06 | 41.86 |
| Zm00001d036632_P002 | Maize | nucleus | 48.69 | 41.5 |
| Zm00001d045581_P002 | Maize | nucleus | 42.81 | 41.46 |
| GSMUA_Achr1P06480_001 | Banana | plastid | 54.25 | 38.6 |
| HORVU7Hr1G107550.3 | Barley | nucleus | 50.33 | 36.41 |
| GSMUA_Achr1P15370_001 | Banana | mitochondrion | 14.38 | 36.07 |
| CDY10419 | Canola | nucleus | 45.42 | 26.03 |
| CDY16939 | Canola | nucleus | 22.88 | 23.33 |
| CDY38566 | Canola | nucleus | 22.88 | 21.81 |
| CDY26997 | Canola | nucleus | 22.22 | 21.18 |
| CDY26169 | Canola | nucleus | 20.59 | 20.06 |
| CDX69388 | Canola | nucleus | 24.18 | 19.79 |
| CDY02714 | Canola | nucleus | 23.2 | 19.24 |
| CDX85462 | Canola | nucleus | 23.2 | 19.03 |
| CDX78737 | Canola | nucleus | 22.22 | 18.63 |
| CDX70747 | Canola | nucleus | 21.9 | 18.56 |
| CDY19206 | Canola | nucleus | 19.61 | 16.57 |
| CDX80051 | Canola | nucleus | 24.84 | 13.77 |
| CDX80750 | Canola | nucleus | 24.84 | 13.4 |
| CDY61862 | Canola | nucleus | 25.16 | 13.14 |
| CDX90004 | Canola | nucleus | 25.16 | 12.66 |
| CDY15205 | Canola | nucleus | 25.16 | 12.34 |
| CDY41563 | Canola | nucleus | 25.49 | 10.37 |
| CDY64825 | Canola | cytosol, nucleus, plastid | 1.96 | 3.82 |
| CDX80052 | Canola | cytosol | 0.65 | 0.93 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | MapMan:27.1.6.2 | GO:A0A078IS80 | UniProt:A0A078IS80 | EnsemblPlants:CDY52837 |
| ProteinID:CDY52837 | ProteinID:CDY52837.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00007983001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR12802 | PANTHER:PTHR12802:SF83 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 |
| UniParc:UPI0004EE6E37 | SEG:seg | : | : | : | : |
Description
BnaA10g28420DBnaA10g28420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IS80]
Coordinates
chrLK033136:-:180..2558
Molecular Weight (calculated)
33783.8 Da
IEP (calculated)
9.442
GRAVY (calculated)
-0.678
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPADGSLLD PNGTMTVPAI GPLTSSEDLS KKIRKPYTIS KSRESWTEPE HDKFLEALQL FDRDWKKIEA FIGSKTVIQI RSHAQKYFLK VQKSGTAEHL
101: PPPRPKRKAA HPYPQKAQKN VQPQVPGSFK STAEPNDPSY MFRPESSSML MTSPPPTAAA AAPWTNNVQT ISFTPLPKET AGAGANNNCS SSSENTPRPR
201: SNKDTNVQAN PGHSLRVLPD FGQVYSFIGS VFDPYASNHL QKLKKMDPID VETVLLLMRN LSINLSSPDF EDHRRLLSSY DIGSETAADH GGVFKTLNKE
301: PPEIST
101: PPPRPKRKAA HPYPQKAQKN VQPQVPGSFK STAEPNDPSY MFRPESSSML MTSPPPTAAA AAPWTNNVQT ISFTPLPKET AGAGANNNCS SSSENTPRPR
201: SNKDTNVQAN PGHSLRVLPD FGQVYSFIGS VFDPYASNHL QKLKKMDPID VETVLLLMRN LSINLSSPDF EDHRRLLSSY DIGSETAADH GGVFKTLNKE
301: PPEIST
001: MVSRNSDGYF LDPTGMTVPG LGPSFTAAVS SSSSPTTSST AVAVADVTAM VSSSEEDLSK KIRKPYTITK SRESWTEPEH DKFLEALQLF DRDWKKIEAF
101: IGSKTVIQIR SHAQKYFLKV QKSGTGEHLP PPRPKRKAAH PYPQKAHKNV QLQVPGSFKS TSEPNDPSFM FRPESSSMLM TSPTTAAAAP WTNNAQTISF
201: TPLPKAGAGA NNNCSSSSEN TPRPRSNRDA RDHGNVGHSL RVLPDFAQVY GFIGSVFDPY ASNHLQKLKK MDPIDVETVL LLMRNLSINL SSPDFEDHRR
301: LLSSYDIGSE TATDHGGVNK TLNKDPPEIS T
101: IGSKTVIQIR SHAQKYFLKV QKSGTGEHLP PPRPKRKAAH PYPQKAHKNV QLQVPGSFKS TSEPNDPSFM FRPESSSMLM TSPTTAAAAP WTNNAQTISF
201: TPLPKAGAGA NNNCSSSSEN TPRPRSNRDA RDHGNVGHSL RVLPDFAQVY GFIGSVFDPY ASNHLQKLKK MDPIDVETVL LLMRNLSINL SSPDFEDHRR
301: LLSSYDIGSE TATDHGGVNK TLNKDPPEIS T
Arabidopsis Description
RVE6Protein REVEILLE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.