CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
plastid 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029111.1-P	Field mustard	nucleus	89.66	97.5
CDY56155	Canola	nucleus	89.94	96.9
CDY52837	Canola	nucleus	78.16	88.89
CDY27841	Canola	nucleus	70.69	86.01
AT5G52660.2	Thale cress	nucleus	80.17	84.29
KRH08856	Soybean	nucleus	55.46	64.12
TraesCS6D01G239800.1	Wheat	nucleus	50.57	61.54
TraesCS6B01G266800.3	Wheat	nucleus	50.57	61.54
Os02t0680700-01	Rice	nucleus	51.44	61.51
HORVU6Hr1G066000.1	Barley	nucleus	50.0	61.48
KRH35235	Soybean	nucleus	54.6	60.9
KXG31009	Sorghum	nucleus	48.85	60.5
Zm00001d017609_P011	Maize	nucleus	47.41	60.44
VIT_16s0050g01180.t01	Wine grape	nucleus	58.33	60.24
Solyc06g036300.2.1	Tomato	nucleus, plastid	51.72	59.8
GSMUA_Achr5P10280_001	Banana	nucleus	45.69	58.46
KRG91589	Soybean	nucleus	55.17	58.36
PGSC0003DMT400074344	Potato	plastid	46.84	56.4
GSMUA_Achr7P17560_001	Banana	nucleus	48.28	56.0
CDX90039	Canola	plastid	43.39	55.93
CDY15171	Canola	nucleus	43.1	55.56
KRH38371	Soybean	nucleus	56.03	55.24
HORVU0Hr1G031850.1	Barley	nucleus, plastid	51.72	54.05
CDY07188	Canola	nucleus	44.25	51.68
TraesCS6A01G258600.2	Wheat	nucleus	50.29	51.17
CDX80840	Canola	nucleus	39.37	50.74
Os06t0669700-01	Rice	nucleus	35.92	50.61
HORVU7Hr1G001830.3	Barley	nucleus	39.37	50.55
CDY41299	Canola	nucleus	40.8	50.0
Os06t0105800-02	Rice	nucleus	42.82	50.0
TraesCS7D01G014900.2	Wheat	nucleus	40.52	49.82
CDY48515	Canola	nucleus	43.39	49.35
TraesCS7A01G017600.1	Wheat	nucleus	39.37	49.28
CDY11228	Canola	nucleus	39.08	49.28
CDX70341	Canola	nucleus	40.23	49.12
KXG20579	Sorghum	nucleus	47.7	48.97
CDY44719	Canola	nucleus	42.53	48.68
CDY41598	Canola	nucleus	41.67	48.17
EER89043	Sorghum	nucleus	43.68	47.95
TraesCS4A01G474100.2	Wheat	nucleus	41.95	47.25
TraesCS7B01G372500.1	Wheat	nucleus	46.26	47.21
TraesCS7A01G470700.1	Wheat	nucleus	45.98	47.06
TraesCS7D01G458000.1	Wheat	nucleus	45.98	46.92
Zm00001d046974_P002	Maize	nucleus	44.83	46.29
Zm00001d045581_P002	Maize	nucleus	40.23	44.3
Zm00001d036632_P002	Maize	nucleus	45.4	44.01
GSMUA_Achr1P03720_001	Banana	nucleus	42.24	42.73
GSMUA_Achr1P06480_001	Banana	plastid	50.86	41.16
HORVU7Hr1G107550.3	Barley	nucleus	47.13	38.77
GSMUA_Achr1P15370_001	Banana	mitochondrion	12.93	36.89
CDY10419	Canola	nucleus	41.09	26.78
CDY16939	Canola	nucleus	20.69	24.0
CDY38566	Canola	nucleus	21.26	23.05
CDY26997	Canola	nucleus	20.69	22.43
CDY26169	Canola	nucleus	18.68	20.7
CDX69388	Canola	nucleus	21.55	20.05
CDY02714	Canola	nucleus	20.98	19.78
CDX70747	Canola	nucleus	20.4	19.67
CDX85462	Canola	nucleus	20.98	19.57
CDX78737	Canola	nucleus	20.4	19.45
CDY19206	Canola	nucleus	18.39	17.68
CDX80051	Canola	nucleus	22.41	14.13
CDX80750	Canola	nucleus	22.41	13.76
CDY61862	Canola	nucleus	22.7	13.48
CDX90004	Canola	nucleus	22.7	12.99
CDY15205	Canola	nucleus	22.7	12.66
CDY41563	Canola	nucleus	22.7	10.51
CDY64825	Canola	cytosol, nucleus, plastid	1.44	3.18
CDX80052	Canola	cytosol	0.29	0.46

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.6.2	GO:A0A078IPE3	UniProt:A0A078IPE3	EnsemblPlants:CDY51831
ProteinID:CDY51831	ProteinID:CDY51831.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00004307001
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR12802	PANTHER:PTHR12802:SF83	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI0004EE8880	SEG:seg	:	:	:	:

Description

BnaC03g15430DBnaC03g15430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IPE3]

Coordinates

chrLK033032:+:57761..60383

Molecular Weight (calculated)

38220.2 Da

IEP (calculated)

9.362

GRAVY (calculated)

-0.503

Length

348 amino acids

Sequence
(BLAST)

001: MRLYIHYILL SLPSSSSSFY TSFNFLVMVS RNPNPADGCF LDPKAMPVVP AIGPFAAVAD AAETVSSGED LSKKIRKPYT ITKSRESWTE PEHDKFLEAL
101: QLFDRDWKKI EAFIGSKTVI QIRSHAQKYF LKVQKSGTGE HLPPPRPKRK AAHPYPQKAH KNAQPQVPGS FKSSAPEPID PSSYMFRPES SSMLMTSPTT
201: PAAAAAPWTN NVQTISFTPL PKAGAGANNN CSSSSENTPK PRSNRDTAEQ ANPGHSLRVL PDFAQVYSFI GSVFDPYASN HLQKLKKMDP IDVETVLLLM
301: RNLSINLSSP DFEDHRRLLS AYDIGSEAAT DPGGGSKTLN KDPPEIST

Best Arabidopsis Sequence Match ( AT5G52660.2 )
(BLAST)

001: MVSRNSDGYF LDPTGMTVPG LGPSFTAAVS SSSSPTTSST AVAVADVTAM VSSSEEDLSK KIRKPYTITK SRESWTEPEH DKFLEALQLF DRDWKKIEAF
101: IGSKTVIQIR SHAQKYFLKV QKSGTGEHLP PPRPKRKAAH PYPQKAHKNV QLQVPGSFKS TSEPNDPSFM FRPESSSMLM TSPTTAAAAP WTNNAQTISF
201: TPLPKAGAGA NNNCSSSSEN TPRPRSNRDA RDHGNVGHSL RVLPDFAQVY GFIGSVFDPY ASNHLQKLKK MDPIDVETVL LLMRNLSINL SSPDFEDHRR
301: LLSSYDIGSE TATDHGGVNK TLNKDPPEIS T

Arabidopsis Description

RVE6Protein REVEILLE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.