Factsheet for TraesCS6D01G239800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G266800.3	Wheat	nucleus	99.3	99.3
HORVU6Hr1G066000.1	Barley	nucleus	97.55	98.59
KXG31009	Sorghum	nucleus	84.27	85.77
Os02t0680700-01	Rice	nucleus	86.01	84.54
HORVU0Hr1G031850.1	Barley	nucleus, plastid	97.55	83.78
Zm00001d017609_P011	Maize	nucleus	79.02	82.78
TraesCS6A01G258600.2	Wheat	nucleus	97.9	81.87
GSMUA_Achr5P10280_001	Banana	nucleus	60.14	63.24
KRH08856	Soybean	nucleus	61.19	58.14
Solyc06g036300.2.1	Tomato	nucleus, plastid	59.44	56.48
KRH35235	Soybean	nucleus	61.54	56.41
CDY52837	Canola	nucleus	59.79	55.88
Bra003117.1-P	Field mustard	nucleus	59.44	55.56
Bra029111.1-P	Field mustard	nucleus	61.19	54.69
CDY56155	Canola	nucleus	61.19	54.18
VIT_16s0050g01180.t01	Wine grape	nucleus	62.94	53.41
KRG91589	Soybean	nucleus	61.19	53.19
AT5G52660.2	Thale cress	nucleus	61.19	52.87
PGSC0003DMT400074344	Potato	plastid	52.8	52.25
CDY27841	Canola	nucleus	52.1	52.1
CDY51831	Canola	vacuole	61.54	50.57
TraesCS7D01G014900.2	Wheat	nucleus	50.0	50.53
KRH38371	Soybean	nucleus	60.14	48.73
TraesCS7D01G458000.1	Wheat	nucleus	57.34	48.09
GSMUA_Achr1P03720_001	Banana	nucleus	55.94	46.51
TraesCS1D01G111400.1	Wheat	mitochondrion	26.57	34.39
TraesCS3D01G134000.1	Wheat	nucleus	34.62	33.22
TraesCS6D01G241900.1	Wheat	nucleus	26.92	17.15
TraesCS2D01G456900.1	Wheat	nucleus	24.83	17.07
TraesCS7D01G540700.3	Wheat	nucleus	24.48	14.49
TraesCS7D01G295400.1	Wheat	nucleus	27.97	10.71

Protein Annotations

EnsemblPlants:TraesCS6D01G239800.1	EnsemblPlantsGene:TraesCS6D01G239800	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	InterPro:SANT/Myb
PANTHER:PTHR12802	PANTHER:PTHR12802:SF83	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	TIGR:cd00167	TIGRFAMs:TIGR01557	MapMan:15.5.2.2	MapMan:27.1.6.2	:

Description

No Description!

Coordinates

chr6D:-:340945873..340950387

Molecular Weight (calculated)

31506.3 Da

IEP (calculated)

9.256

GRAVY (calculated)

-0.553

Length

286 amino acids

Sequence
(BLAST)

001: MVSTNPPPPP ALSEAAAAVS GDDASKKVRK PYTITKSRES WTEQEHDKFL EALQLFDRDW KKIEAFVGSK TVIQIRSHAQ KYFLKVQKNG TSEHVPPPRP
101: KRKAAHPYPQ KASKNEPGYA LKTDPSAMLR NSGMNVAVSP WTHNSIPPVV ASSFMKEDLG AGSMGPNIFC SSSSEGPPRA WQSGETNDQI NQVPSLRIMP
201: DFAQVYSFLG SVFDPSTKGH LQKLKEMNPI DVETALLLMR NLSINLTSPD FEDQRKLLSS YNSTSDGLEL GSSRSSLLTD NALSLF

Best Arabidopsis Sequence Match ( AT5G52660.1 )
(BLAST)

001: MVSRNSDGYF LDPTGMTVPG LGPSFTAAVS SSSSPTTSST AVAVADVTAM VSSSEEDLSK KIRKPYTITK SRESWTEPEH DKFLEALQLF DRDWKKIEAF
101: IGSKTVIQIR SHAQKYFLKV QKSGTGEHLP PPRPKRKAAH PYPQKAHKNV QLQVPGSFKS TSEPNDPSFM FRPESSSMLM TSPTTAAAAP WTNNAQTISF
201: TPLPKGAGAN NNCSSSSENT PRPRSNRDAR DHGNVGHSLR VLPDFAQVYG FIGSVFDPYA SNHLQKLKKM DPIDVETVLL LMRNLSINLS SPDFEDHRRL
301: LSSYDIGSET ATDHGGVNKT LNKDPPEIST

Arabidopsis Description

RVE6Protein REVEILLE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.