Factsheet for TraesCS6A01G258600.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G239800.1	Wheat	nucleus	81.87	97.9
TraesCS6B01G266800.3	Wheat	nucleus	81.29	97.2
HORVU6Hr1G066000.1	Barley	nucleus	80.12	96.82
KXG31009	Sorghum	nucleus	69.59	84.7
Os02t0680700-01	Rice	nucleus	71.34	83.85
HORVU0Hr1G031850.1	Barley	nucleus, plastid	80.12	82.28
Zm00001d017609_P011	Maize	nucleus	65.5	82.05
GSMUA_Achr5P10280_001	Banana	nucleus	50.29	63.24
KRH08856	Soybean	nucleus	51.17	58.14
Solyc06g036300.2.1	Tomato	nucleus, plastid	49.71	56.48
KRH35235	Soybean	nucleus	51.17	56.09
CDY52837	Canola	nucleus	49.71	55.56
Bra003117.1-P	Field mustard	nucleus	49.42	55.23
Bra029111.1-P	Field mustard	nucleus	50.88	54.38
CDY56155	Canola	nucleus	50.88	53.87
VIT_16s0050g01180.t01	Wine grape	nucleus	52.92	53.71
KRG91589	Soybean	nucleus	50.88	52.89
AT5G52660.2	Thale cress	nucleus	50.88	52.57
PGSC0003DMT400074344	Potato	plastid	44.15	52.25
CDY27841	Canola	nucleus	43.27	51.75
CDY51831	Canola	vacuole	51.17	50.29
TraesCS7A01G017600.1	Wheat	nucleus	40.64	50.0
KRH38371	Soybean	nucleus	50.58	49.01
TraesCS7A01G470700.1	Wheat	nucleus	47.95	48.24
GSMUA_Achr1P03720_001	Banana	nucleus	47.37	47.09
TraesCS4A01G474100.2	Wheat	nucleus	42.4	46.93
TraesCS1A01G107700.1	Wheat	mitochondrion	22.22	34.7
TraesCS3A01G308500.1	Wheat	nucleus	29.24	33.56
TraesCS2A01G456600.1	Wheat	nucleus	21.34	17.46
TraesCS6A01G261100.1	Wheat	nucleus	22.51	16.28
TraesCS7A01G553800.1	Wheat	nucleus	21.05	14.15
TraesCS7A01G299400.3	Wheat	nucleus	23.39	10.72

Protein Annotations

EnsemblPlants:TraesCS6A01G258600.2	EnsemblPlantsGene:TraesCS6A01G258600	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	InterPro:SANT/Myb
PANTHER:PTHR12802	PANTHER:PTHR12802:SF83	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	TIGR:cd00167	TIGRFAMs:TIGR01557	MapMan:15.5.2.2	MapMan:27.1.6.2	:

Description

No Description!

Coordinates

chr6A:-:480694843..480698528

Molecular Weight (calculated)

37721.0 Da

IEP (calculated)

9.353

GRAVY (calculated)

-0.320

Length

342 amino acids

Sequence
(BLAST)

001: MVSTNPPPPL SEAAAAASSD DASKKVRKPY TITKSRESWT EQEHDKFLEA LQLFDRDWKK IEAFVGSKTV IQIRSHAQKY FLKVQKNGTS EHVPPPRPKR
101: KAAHPYPQKA SKNESGYALK TDPSAMLRNS GMNVAVSPWT HNSIPPVVAS SFMKDLGAGS MGPNIFCSSS SEGPPRAWQS GETNDQINQV PSLRIMPDFA
201: QVYSFLGSVF DPSTKGHLQK LKEMNPIDVE TALLLMRNLS INLTSPDFED QAVSFRCLTP YLVSSRSYFF PIKKLQRIST ACSCLLELGC LFTHCASSRV
301: CPIAMVSAFL RKLLSSYNST SDGLELGSSR SSLLTDNALS LF

Best Arabidopsis Sequence Match ( AT3G09600.1 )
(BLAST)

001: MSSSPSRNPT NAEAPPPPPT STDAVAEGSS KKVRKPYTIT KSRESWTEEE HDKFLEALQL FDRDWKKIED FVGSKTVIQI RSHAQKYFLK VQKNGTLAHV
101: PPPRPKRKAA HPYPQKASKN AQMPLQVSTS FTTTRNGDMP GYASWDDASM LLNRVISPQH ELATLRGAEA DIGSKGLLNV SSPSTSGMGS SSRTVSGSEI
201: VRKAKQPPVL HGVPDFAEVY NFIGSVFDPE TRGHVEKLKE MDPINFETVL LLMRNLTVNL SNPDLESTRK VLLSYDNVTT ELPSVVSLVK NSTSDKSA

Arabidopsis Description

RVE8Protein REVEILLE 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWU3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.