Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52837 | Canola | nucleus | 80.66 | 87.25 |
| Bra003117.1-P | Field mustard | nucleus | 80.36 | 86.93 |
| Bra029111.1-P | Field mustard | nucleus | 83.08 | 85.94 |
| CDY56155 | Canola | nucleus | 83.38 | 85.45 |
| CDY27841 | Canola | nucleus | 73.41 | 84.97 |
| CDY51831 | Canola | vacuole | 84.29 | 80.17 |
| KRH08856 | Soybean | nucleus | 57.4 | 63.12 |
| KRH35235 | Soybean | nucleus | 58.61 | 62.18 |
| TraesCS6D01G239800.1 | Wheat | nucleus | 52.87 | 61.19 |
| TraesCS6B01G266800.3 | Wheat | nucleus | 52.87 | 61.19 |
| Solyc06g036300.2.1 | Tomato | nucleus, plastid | 55.29 | 60.8 |
| HORVU6Hr1G066000.1 | Barley | nucleus | 51.96 | 60.78 |
| Os02t0680700-01 | Rice | nucleus | 53.17 | 60.48 |
| VIT_16s0050g01180.t01 | Wine grape | nucleus | 61.33 | 60.24 |
| Zm00001d017609_P011 | Maize | nucleus | 49.55 | 60.07 |
| KXG31009 | Sorghum | nucleus | 50.76 | 59.79 |
| KRG91589 | Soybean | nucleus | 57.7 | 58.05 |
| GSMUA_Achr5P10280_001 | Banana | nucleus | 47.43 | 57.72 |
| PGSC0003DMT400074344 | Potato | plastid | 49.55 | 56.75 |
| GSMUA_Achr7P17560_001 | Banana | nucleus | 50.15 | 55.33 |
| KRH38371 | Soybean | nucleus | 56.8 | 53.26 |
| HORVU0Hr1G031850.1 | Barley | nucleus, plastid | 51.96 | 51.65 |
| TraesCS6A01G258600.2 | Wheat | nucleus | 52.57 | 50.88 |
| HORVU7Hr1G001830.3 | Barley | nucleus | 41.39 | 50.55 |
| Os06t0669700-01 | Rice | nucleus | 37.46 | 50.2 |
| AT4G01280.2 | Thale cress | nucleus | 45.92 | 50.16 |
| Os06t0105800-02 | Rice | nucleus | 45.02 | 50.0 |
| AT3G09600.7 | Thale cress | nucleus | 45.02 | 50.0 |
| AT1G01520.3 | Thale cress | plastid | 43.2 | 49.83 |
| TraesCS7D01G014900.2 | Wheat | nucleus | 42.6 | 49.82 |
| TraesCS7A01G017600.1 | Wheat | nucleus | 41.39 | 49.28 |
| KXG20579 | Sorghum | nucleus | 49.85 | 48.67 |
| EER89043 | Sorghum | nucleus | 45.62 | 47.63 |
| AT5G02840.1 | Thale cress | nucleus | 41.99 | 47.44 |
| TraesCS4A01G474100.2 | Wheat | nucleus | 44.11 | 47.25 |
| TraesCS7A01G470700.1 | Wheat | nucleus | 48.34 | 47.06 |
| TraesCS7B01G372500.1 | Wheat | nucleus | 48.34 | 46.92 |
| TraesCS7D01G458000.1 | Wheat | nucleus | 48.34 | 46.92 |
| Zm00001d046974_P002 | Maize | nucleus | 46.22 | 45.4 |
| Zm00001d045581_P002 | Maize | nucleus | 41.99 | 43.99 |
| Zm00001d036632_P002 | Maize | nucleus | 47.13 | 43.45 |
| GSMUA_Achr1P03720_001 | Banana | nucleus | 44.71 | 43.02 |
| GSMUA_Achr1P06480_001 | Banana | plastid | 52.87 | 40.7 |
| HORVU7Hr1G107550.3 | Barley | nucleus | 48.64 | 38.06 |
| GSMUA_Achr1P15370_001 | Banana | mitochondrion | 12.99 | 35.25 |
| AT5G37260.1 | Thale cress | nucleus | 20.85 | 24.04 |
| AT3G10113.1 | Thale cress | nucleus | 19.94 | 19.64 |
| AT5G17300.1 | Thale cress | nucleus | 22.96 | 19.64 |
| AT1G18330.2 | Thale cress | nucleus | 20.54 | 18.28 |
| AT2G46830.1 | Thale cress | nucleus | 24.17 | 13.16 |
| AT1G01060.7 | Thale cress | nucleus | 25.38 | 13.02 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | MapMan:27.1.6.2 | EntrezGene:835343 | ProteinID:AED96246.1 | ProteinID:AED96247.1 |
| EMBL:AJ937210 | ArrayExpress:AT5G52660 | EnsemblPlantsGene:AT5G52660 | RefSeq:AT5G52660 | TAIR:AT5G52660 | RefSeq:AT5G52660-TAIR-G |
| EnsemblPlants:AT5G52660.2 | TAIR:AT5G52660.2 | EMBL:AY087690 | EMBL:AY550303 | ProteinID:BAA98084.1 | EMBL:BT002002 |
| EMBL:BT025882 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 |
| GO:GO:0009651 | GO:GO:0009719 | GO:GO:0009723 | GO:GO:0009737 | GO:GO:0009739 | GO:GO:0009751 |
| GO:GO:0009753 | GO:GO:0009987 | GO:GO:0042752 | GO:GO:0046686 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| InterPro:Myb_dom | InterPro:Myb_dom_plants | RefSeq:NP_568776.2 | RefSeq:NP_851177.1 | PFAM:PF00249 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS51294 | PANTHER:PTHR12802 | PANTHER:PTHR12802:SF83 | UniProt:Q8H0W3 | InterPro:SANT/Myb | SMART:SM00717 |
| SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI00000ADB41 | SEG:seg | : | : |
Description
RVE6Protein REVEILLE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W3]
Coordinates
chr5:-:21359001..21362273
Molecular Weight (calculated)
36266.5 Da
IEP (calculated)
9.450
GRAVY (calculated)
-0.598
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSRNSDGYF LDPTGMTVPG LGPSFTAAVS SSSSPTTSST AVAVADVTAM VSSSEEDLSK KIRKPYTITK SRESWTEPEH DKFLEALQLF DRDWKKIEAF
101: IGSKTVIQIR SHAQKYFLKV QKSGTGEHLP PPRPKRKAAH PYPQKAHKNV QLQVPGSFKS TSEPNDPSFM FRPESSSMLM TSPTTAAAAP WTNNAQTISF
201: TPLPKAGAGA NNNCSSSSEN TPRPRSNRDA RDHGNVGHSL RVLPDFAQVY GFIGSVFDPY ASNHLQKLKK MDPIDVETVL LLMRNLSINL SSPDFEDHRR
301: LLSSYDIGSE TATDHGGVNK TLNKDPPEIS T
101: IGSKTVIQIR SHAQKYFLKV QKSGTGEHLP PPRPKRKAAH PYPQKAHKNV QLQVPGSFKS TSEPNDPSFM FRPESSSMLM TSPTTAAAAP WTNNAQTISF
201: TPLPKAGAGA NNNCSSSSEN TPRPRSNRDA RDHGNVGHSL RVLPDFAQVY GFIGSVFDPY ASNHLQKLKK MDPIDVETVL LLMRNLSINL SSPDFEDHRR
301: LLSSYDIGSE TATDHGGVNK TLNKDPPEIS T
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.