Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70341 | Canola | nucleus | 84.64 | 87.02 |
| CDY11228 | Canola | nucleus | 80.2 | 85.14 |
| CDX80840 | Canola | nucleus | 77.13 | 83.7 |
| Bra005751.1-P | Field mustard | nucleus | 80.2 | 83.04 |
| Bra009562.1-P | Field mustard | nucleus | 81.57 | 76.6 |
| AT3G09600.7 | Thale cress | nucleus | 67.58 | 66.44 |
| VIT_08s0040g03220.t01 | Wine grape | nucleus | 58.7 | 60.78 |
| KRH32383 | Soybean | plastid | 59.39 | 59.18 |
| PGSC0003DMT400028711 | Potato | nucleus | 57.68 | 59.09 |
| Solyc10g084370.1.1 | Tomato | nucleus | 59.04 | 58.45 |
| KRH19794 | Soybean | nucleus | 59.04 | 57.48 |
| KRG95914 | Soybean | nucleus | 56.31 | 57.09 |
| KRH67632 | Soybean | nucleus | 57.68 | 56.52 |
| AT1G01520.3 | Thale cress | plastid | 43.69 | 44.6 |
| CDY10419 | Canola | nucleus | 77.82 | 42.7 |
| AT5G52660.2 | Thale cress | nucleus | 47.44 | 41.99 |
| AT4G01280.2 | Thale cress | nucleus | 41.98 | 40.59 |
| AT5G37260.1 | Thale cress | nucleus | 22.53 | 23.0 |
| AT3G10113.1 | Thale cress | nucleus | 20.82 | 18.15 |
| AT5G17300.1 | Thale cress | nucleus | 23.89 | 18.09 |
| AT1G18330.2 | Thale cress | nucleus | 21.5 | 16.94 |
| AT2G46830.1 | Thale cress | nucleus | 22.87 | 11.02 |
| AT1G01060.7 | Thale cress | nucleus | 23.89 | 10.85 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | MapMan:27.1.6.2 | EntrezGene:831766 | UniProt:A0A178U8Z5 | ProteinID:AED90524.1 |
| ProteinID:AED90525.1 | ProteinID:AED90526.1 | EMBL:AJ937209 | EMBL:AK317012 | EMBL:AL162973 | ArrayExpress:AT5G02840 |
| EnsemblPlantsGene:AT5G02840 | RefSeq:AT5G02840 | TAIR:AT5G02840 | RefSeq:AT5G02840-TAIR-G | EnsemblPlants:AT5G02840.1 | TAIR:AT5G02840.1 |
| EMBL:AY042894 | EMBL:AY081522 | EMBL:AY519514 | Unigene:At.20108 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 |
| GO:GO:0007623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009651 |
| GO:GO:0009719 | GO:GO:0009723 | GO:GO:0009733 | GO:GO:0009737 | GO:GO:0009739 | GO:GO:0009751 |
| GO:GO:0009753 | GO:GO:0009987 | GO:GO:0046686 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | Symbol:LCL1 |
| InterPro:Myb_dom | InterPro:Myb_dom_plants | RefSeq:NP_001031823.1 | RefSeq:NP_568108.1 | RefSeq:NP_850756.1 | ProteinID:OAO89684.1 |
| PFAM:PF00249 | PO:PO:0000003 | PO:PO:0000013 | PO:PO:0000014 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS51294 | PANTHER:PTHR12802 | PANTHER:PTHR12802:SF81 |
| UniProt:Q6R0G4 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0000162443 |
| SEG:seg | : | : | : | : | : |
Description
RVE4LCL1 [Source:UniProtKB/TrEMBL;Acc:A0A178U8Z5]
Coordinates
chr5:+:648648..651979
Molecular Weight (calculated)
32208.8 Da
IEP (calculated)
5.092
GRAVY (calculated)
-0.526
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSTNPVVAE VIPAETSTDA TETTIATTEA GEAPEKKVRK AYTITKSRES WTEGEHDKFL EALQLFDRDW KKIEDFVGSK TVIQIRSHAQ KYFLKVQKNG
101: TLAHVPPPRP KRKAAHPYPQ KASKNAQMSL HVSMSFPTQI NNLPGYTPWD DDTSALLNIA VSGVIPPEDE LDTLCGAEVD VGSNDMISET SPSASGIGSS
201: SRTLSDSKGL RLAKQAPSMH GLPDFAEVYN FIGSVFDPDS KGRMKKLKEM DPINFETVLL LMRNLTVNLS NPDFEPTSEY VDAAEEGHEH LSS
101: TLAHVPPPRP KRKAAHPYPQ KASKNAQMSL HVSMSFPTQI NNLPGYTPWD DDTSALLNIA VSGVIPPEDE LDTLCGAEVD VGSNDMISET SPSASGIGSS
201: SRTLSDSKGL RLAKQAPSMH GLPDFAEVYN FIGSVFDPDS KGRMKKLKEM DPINFETVLL LMRNLTVNLS NPDFEPTSEY VDAAEEGHEH LSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.