Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11228 | Canola | nucleus | 86.32 | 89.13 |
| Bra009562.1-P | Field mustard | nucleus | 95.44 | 87.18 |
| CDX80840 | Canola | nucleus | 82.46 | 87.04 |
| AT5G02840.1 | Thale cress | nucleus | 87.02 | 84.64 |
| CDY44719 | Canola | nucleus | 68.07 | 63.82 |
| CDY41299 | Canola | nucleus | 63.16 | 63.38 |
| CDY41598 | Canola | nucleus | 65.96 | 62.46 |
| VIT_08s0040g03220.t01 | Wine grape | nucleus | 58.95 | 59.36 |
| KRH32383 | Soybean | plastid | 60.0 | 58.16 |
| PGSC0003DMT400028711 | Potato | nucleus | 58.25 | 58.04 |
| Solyc10g084370.1.1 | Tomato | nucleus | 59.65 | 57.43 |
| KRH19794 | Soybean | nucleus | 60.35 | 57.14 |
| KRG95914 | Soybean | nucleus | 56.84 | 56.06 |
| KRH67632 | Soybean | nucleus | 58.6 | 55.85 |
| CDX90039 | Canola | plastid | 44.56 | 47.04 |
| CDY15171 | Canola | nucleus | 43.86 | 46.3 |
| CDY52837 | Canola | nucleus | 48.77 | 45.42 |
| CDY10419 | Canola | nucleus | 83.51 | 44.57 |
| CDY56155 | Canola | nucleus | 49.12 | 43.34 |
| CDY27841 | Canola | nucleus | 42.81 | 42.66 |
| CDY07188 | Canola | nucleus | 42.81 | 40.94 |
| CDY48515 | Canola | nucleus | 43.51 | 40.52 |
| CDY51831 | Canola | vacuole | 49.12 | 40.23 |
| CDY16939 | Canola | nucleus | 22.81 | 21.67 |
| CDY38566 | Canola | nucleus | 22.81 | 20.25 |
| CDY26997 | Canola | nucleus | 22.11 | 19.63 |
| CDX70747 | Canola | nucleus | 22.81 | 18.01 |
| CDY02714 | Canola | nucleus | 23.16 | 17.89 |
| CDX85462 | Canola | nucleus | 23.16 | 17.69 |
| CDX69388 | Canola | nucleus | 23.16 | 17.65 |
| CDX78737 | Canola | nucleus | 22.46 | 17.53 |
| CDY26169 | Canola | nucleus | 19.3 | 17.52 |
| CDY19206 | Canola | nucleus | 20.0 | 15.75 |
| CDX80051 | Canola | nucleus | 23.16 | 11.96 |
| CDX90004 | Canola | nucleus | 24.56 | 11.51 |
| CDY61862 | Canola | nucleus | 23.51 | 11.43 |
| CDX80750 | Canola | nucleus | 22.46 | 11.29 |
| CDY15205 | Canola | nucleus | 24.56 | 11.22 |
| CDY41563 | Canola | nucleus | 22.81 | 8.64 |
| CDY64825 | Canola | cytosol, nucleus, plastid | 0.35 | 0.64 |
| CDX80052 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | MapMan:27.1.6.2 | GO:A0A078C048 | EnsemblPlants:CDX70341 | ProteinID:CDX70341 |
| ProteinID:CDX70341.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00136500001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR12802 | PANTHER:PTHR12802:SF81 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 |
| UniParc:UPI0004EF125B | SEG:seg | : | : | : | : |
Description
BnaA10g26900D
Coordinates
chrLK031790:-:4184247..4186677
Molecular Weight (calculated)
31449.9 Da
IEP (calculated)
5.426
GRAVY (calculated)
-0.579
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSSLSSNPM VAEEERPMET STDLIETTTT EAPEKKVRKA YTITKSRESW TEGEHDKFLE ALQLFDRDWK KIEDFVGSKT VIQIRSHAQK YFLKVQKNGT
101: LAHVPPPRPK RKAAHPYPQK ASKNAQMSLH VSMSFPTQIN NVPGFTSWDD DTSALLNIAV SEVILPKDEL TTLYVIESNG STSGGSPSAS GIGSSSRTLS
201: DSKTANQAPS MHGLPDFAEV YNFIGSVFDP DSKGRMKKLK EMDPINFETV LLLMRNLTVN LSNPDFEPAS EYSDAAGEGP EQLSS
101: LAHVPPPRPK RKAAHPYPQK ASKNAQMSLH VSMSFPTQIN NVPGFTSWDD DTSALLNIAV SEVILPKDEL TTLYVIESNG STSGGSPSAS GIGSSSRTLS
201: DSKTANQAPS MHGLPDFAEV YNFIGSVFDP DSKGRMKKLK EMDPINFETV LLLMRNLTVN LSNPDFEPAS EYSDAAGEGP EQLSS
001: MTSTNPVVAE VIPAETSTDA TETTIATTEA GEAPEKKVRK AYTITKSRES WTEGEHDKFL EALQLFDRDW KKIEDFVGSK TVIQIRSHAQ KYFLKVQKNG
101: TLAHVPPPRP KRKAAHPYPQ KASKNAQMSL HVSMSFPTQI NNLPGYTPWD DDTSALLNIA VSGVIPPEDE LDTLCGAEVD VGSNDMISET SPSASGIGSS
201: SRTLSDSKGL RLAKQAPSMH GLPDFAEVYN FIGSVFDPDS KGRMKKLKEM DPINFETVLL LMRNLTVNLS NPDFEPTSEY VDAAEEGHEH LSS
101: TLAHVPPPRP KRKAAHPYPQ KASKNAQMSL HVSMSFPTQI NNLPGYTPWD DDTSALLNIA VSGVIPPEDE LDTLCGAEVD VGSNDMISET SPSASGIGSS
201: SRTLSDSKGL RLAKQAPSMH GLPDFAEVYN FIGSVFDPDS KGRMKKLKEM DPINFETVLL LMRNLTVNLS NPDFEPTSEY VDAAEEGHEH LSS
Arabidopsis Description
RVE4LCL1 [Source:UniProtKB/TrEMBL;Acc:A0A178U8Z5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.