CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033291.1-P	Field mustard	nucleus	98.03	98.19
CDY15205	Canola	nucleus	96.71	94.23
PGSC0003DMT400029394	Potato	nucleus	8.88	79.41
CDY64825	Canola	cytosol, nucleus, plastid	17.93	69.43
CDX80750	Canola	nucleus	64.31	68.96
AT1G01060.7	Thale cress	nucleus	72.86	68.68
CDY61862	Canola	nucleus	65.3	67.75
KRH06339	Soybean	nucleus	51.64	41.87
KRH47757	Soybean	nucleus	51.64	41.87
CDX80051	Canola	nucleus	37.66	41.49
KRH68974	Soybean	nucleus	50.49	41.04
VIT_15s0048g02410.t01	Wine grape	nucleus	51.48	40.6
KRG97259	Soybean	nucleus, plastid	52.3	38.83
Solyc10g005080.2.1	Tomato	nucleus	47.53	37.93
GSMUA_Achr1P06360_001	Banana	nucleus	41.78	34.99
Os08t0157600-01	Rice	nucleus	41.12	34.77
HORVU7Hr1G070870.2	Barley	nucleus	39.8	33.75
CDY16939	Canola	nucleus	16.61	33.67
Zm00001d049543_P003	Maize	nucleus	39.8	33.61
EES13385	Sorghum	nucleus	40.3	32.8
CDY38566	Canola	nucleus	16.94	32.09
TraesCS7B01G188000.1	Wheat	nucleus	38.49	31.62
TraesCS7A01G299400.3	Wheat	nucleus	38.65	31.5
TraesCS7D01G295400.1	Wheat	nucleus	38.49	31.33
CDY26997	Canola	nucleus	16.45	31.15
CDY26169	Canola	nucleus	15.95	30.89
CDX69388	Canola	nucleus	18.09	29.41
CDY41563	Canola	nucleus	36.18	29.26
CDX85462	Canola	nucleus	17.93	29.22
Zm00001d024546_P001	Maize	nucleus	31.74	29.11
CDY02714	Canola	nucleus	17.6	29.0
GSMUA_Achr10P...	Banana	nucleus	27.8	27.98
CDX70747	Canola	nucleus	16.61	27.98
CDY19206	Canola	nucleus	16.45	27.62
CDX78737	Canola	nucleus	16.45	27.4
CDX90039	Canola	plastid	11.84	26.67
CDY41299	Canola	nucleus	12.17	26.06
CDY15171	Canola	nucleus	11.35	25.56
CDY07188	Canola	nucleus	12.5	25.5
CDY48515	Canola	nucleus	12.83	25.49
CDX80840	Canola	nucleus	11.18	25.19
CDY52837	Canola	nucleus	12.66	25.16
CDY44719	Canola	nucleus	12.5	25.0
CDY41598	Canola	nucleus	12.34	24.92
CDY11228	Canola	nucleus	11.18	24.64
CDX70341	Canola	nucleus	11.51	24.56
CDY56155	Canola	nucleus	12.99	24.46
CDY51831	Canola	vacuole	12.99	22.7
CDY27841	Canola	nucleus	10.2	21.68
CDY10419	Canola	nucleus	12.01	13.67
CDX80052	Canola	cytosol	0.49	1.39

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.1	GO:A0A078DNC2	EnsemblPlants:CDX90004	ProteinID:CDX90004
ProteinID:CDX90004.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00150502001	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF82	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
TIGRFAMs:TIGR01557	UniParc:UPI0004EE3154	SEG:seg	:	:	:

Description

BnaA10g00780D

Coordinates

chrLK031861:-:1218938..1222217

Molecular Weight (calculated)

65617.0 Da

IEP (calculated)

6.517

GRAVY (calculated)

-0.773

Length

608 amino acids

Sequence
(BLAST)

001: MDTNTSGDEL LTKARKPYTI TKQRERWTED EHDRFLEALR LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEAEAKG IPVCQALNIE IPPPRPKRKP
101: NTPYPRKPGN NGPSAKLVAS ASSSQCNQAF LDLEKVPISE ETSNGKENQD DNCSGVSTVN KCPLPKKVTQ PSLRKESADN GTSKKASNVN TQFHPPGMVS
201: QDLMFCPMGD RVHGHVNLPP TTTSSATTTT TSQQAFPACP SQDSFLHFSS TFPNLIISSL LQNPAAHAAA TFAASVWPYS NVGNSGGDSS TTQMSSSPPN
301: IAAIAAATVA AATAWWASHG LIPVCAPLAP VTCLPLPTFA VPTQATDKMD TVENDQEPLE KQNTALQDQK LASKSPSSSS DDSEETGVTK LNAAGSKTNG
401: DKEEVVAAAL HDPNASPKKK LVDRSSCGSN TPSGSDAETD ALDKMEKDNE DVKEADPNQP SVIELSNRRS KIRDNNNNNN QTTDSWKEVS QGGRKAFQAL
501: FARQRLPQSF SPPQVAAENV NVNGKQSDTS MPMAPDLNKV QDSCDADQES GVVMIGDGTG KSLKTRQSGF KPYKRCSMEA KESQDGNANN ESDEKVCKRI
601: RLEGEAST

Best Arabidopsis Sequence Match ( AT1G01060.4 )
(BLAST)

001: MDTNTSGEEL LAKARKPYTI TKQRERWTED EHERFLEALR LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEAEVKG IPVCQALDIE IPPPRPKRKP
101: NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK TSTGKENQDE NCSGVSTVNK YPLPTKVSGD IETSKTSTVD NAVQDVPKKN
201: KDKDGNDGTT VHSMQNYPWH FHADIVNGNI AKCPQNHPSG MVSQDFMFHP MREETHGHAN LQATTASATT TASHQAFPAC HSQDDYRSFL QISSTFSNLI
301: MSTLLQNPAA HAAATFAASV WPYASVGNSG DSSTPMSSSP PSITAIAAAT VAAATAWWAS HGLLPVCAPA PITCVPFSTV AVPTPAMTEM DTVENTQPFE
401: KQNTALQDQN LASKSPASSS DDSDETGVTK LNADSKTNDD KIEEVVVTAA VHDSNTAQKK NLVDRSSCGS NTPSGSDAET DALDKMEKDK EDVKETDENQ
501: PDVIELNNRK IKMRDNNSNN NATTDSWKEV SEEGRIAFQA LFARERLPQS FSPPQVAENV NRKQSDTSMP LAPNFKSQDS CAADQEGVVM IGVGTCKSLK
601: TRQTGFKPYK RCSMEVKESQ VGNINNQSDE KVCKRLRLEG EAST

Arabidopsis Description

LHYLHY1 [Source:UniProtKB/TrEMBL;Acc:A0A178W761]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.