Factsheet for Zm00001d024546_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 24677780

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000052_P004
Zm00001d002778_P001
Zm00001d006440_P003
Zm00001d007951_P001
Zm00001d013217_P001
Zm00001d018669_P004
Zm00001d021557_P001
Zm00001d024546_P001	nucleus
Zm00001d029978_P001
Zm00001d034125_P002
Zm00001d049543_P003	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46830.1	Zm00001d024546_P001	AT2G46830.1	14978263
AT2G46830.1	Zm00001d049543_P003	AT2G46830.1	14978263
AT2G46830.1	Zm00001d024546_P001	AT2G46830.1	22715042
AT2G46830.1	Zm00001d049543_P003	AT2G46830.1	22715042
AT2G46830.1	Zm00001d024546_P001	AT2G46830.1	22715042
AT2G46830.1	Zm00001d049543_P003	AT2G46830.1	22715042
AT2G46830.1	Zm00001d000052_P004	AT3G60250.1	10535927
AT2G46830.1	Zm00001d002778_P001	AT3G60250.1	10535927
AT2G46830.1	Zm00001d006440_P003	AT3G60250.1	10535927
AT2G46830.1	Zm00001d021557_P001	AT3G60250.1	10535927
AT2G46830.1	Zm00001d029978_P001	AT3G60250.1	10535927
AT2G46830.1	Zm00001d000052_P004	AT3G60250.1	14978263
AT2G46830.1	Zm00001d002778_P001	AT3G60250.1	14978263
AT2G46830.1	Zm00001d006440_P003	AT3G60250.1	14978263
AT2G46830.1	Zm00001d021557_P001	AT3G60250.1	14978263
AT2G46830.1	Zm00001d029978_P001	AT3G60250.1	14978263
AT2G46830.1	Zm00001d000052_P004	AT3G60250.1	9724822
AT2G46830.1	Zm00001d002778_P001	AT3G60250.1	9724822
AT2G46830.1	Zm00001d006440_P003	AT3G60250.1	9724822
AT2G46830.1	Zm00001d021557_P001	AT3G60250.1	9724822
AT2G46830.1	Zm00001d029978_P001	AT3G60250.1	9724822
AT2G46830.1	Zm00001d000052_P004	AT4G17640.1	9724822
AT2G46830.1	Zm00001d002778_P001	AT4G17640.1	9724822
AT2G46830.1	Zm00001d006440_P003	AT4G17640.1	9724822
AT2G46830.1	Zm00001d021557_P001	AT4G17640.1	9724822
AT2G46830.1	Zm00001d029978_P001	AT4G17640.1	9724822
AT2G46830.1	Zm00001d000052_P004	AT5G47080.1	9724822
AT2G46830.1	Zm00001d002778_P001	AT5G47080.1	9724822
AT2G46830.1	Zm00001d006440_P003	AT5G47080.1	9724822
AT2G46830.1	Zm00001d021557_P001	AT5G47080.1	9724822
AT2G46830.1	Zm00001d029978_P001	AT5G47080.1	9724822
AT2G46830.1	Zm00001d007951_P001	AT5G67380.1	14978263
AT2G46830.1	Zm00001d013217_P001	AT5G67380.1	14978263
AT2G46830.1	Zm00001d018669_P004	AT5G67380.1	14978263
AT2G46830.1	Zm00001d034125_P002	AT5G67380.1	14978263
AT2G46830.1	Zm00001d007951_P001	AT5G67380.1	9724822
AT2G46830.1	Zm00001d013217_P001	AT5G67380.1	9724822
AT2G46830.1	Zm00001d018669_P004	AT5G67380.1	9724822
AT2G46830.1	Zm00001d034125_P002	AT5G67380.1	9724822

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049543_P003	Maize	nucleus	85.97	79.17
Os08t0157600-01	Rice	nucleus	72.25	66.62
CDY64825	Canola	cytosol, nucleus, plastid	9.2	38.85
GSMUA_Achr10P...	Banana	nucleus	31.67	34.77
CDX80750	Canola	nucleus	28.36	33.16
Bra030496.1-P	Field mustard	nucleus	29.26	33.11
CDY61862	Canola	nucleus	29.26	33.11
GSMUA_Achr1P06360_001	Banana	nucleus	35.6	32.51
CDX90004	Canola	nucleus	29.11	31.74
Bra033291.1-P	Field mustard	nucleus	28.96	31.63
CDY15205	Canola	nucleus	29.56	31.41
KRH06339	Soybean	nucleus	35.44	31.33
KRH47757	Soybean	nucleus	35.29	31.2
AT1G01060.7	Thale cress	nucleus	29.86	30.7
VIT_15s0048g02410.t01	Wine grape	nucleus	34.99	30.09
KRH68974	Soybean	nucleus	33.18	29.41
AT2G46830.1	Thale cress	nucleus	26.85	29.28
CDX80051	Canola	nucleus	23.83	28.62
Solyc10g005080.2.1	Tomato	nucleus	32.43	28.22
KRG97259	Soybean	nucleus, plastid	33.18	26.86
CDY41563	Canola	nucleus	23.68	20.88
Zm00001d002545_P002	Maize	nucleus	12.07	18.18
Zm00001d026017_P001	Maize	nucleus	12.07	17.66
Zm00001d051480_P001	Maize	nucleus	10.41	17.47
Zm00001d017609_P011	Maize	nucleus	6.64	16.12
Zm00001d017642_P001	Maize	nucleus	10.71	15.2
Zm00001d014863_P002	Maize	nucleus	9.8	15.05
Zm00001d034947_P001	Maize	mitochondrion	3.02	11.9
Zm00001d034946_P001	Maize	mitochondrion	3.02	11.9
Zm00001d034945_P001	Maize	mitochondrion, nucleus	3.02	11.7
Zm00001d045581_P002	Maize	nucleus	5.13	10.76
Zm00001d044969_P001	Maize	cytosol	1.51	10.64
Zm00001d046974_P002	Maize	nucleus	5.28	10.39
Zm00001d012051_P001	Maize	plastid	2.11	10.29
Zm00001d036632_P002	Maize	nucleus	5.43	10.03
Zm00001d024547_P001	Maize	peroxisome	0.9	10.0
Zm00001d032105_P001	Maize	plastid	1.81	9.45
Zm00001d015487_P001	Maize	nucleus	1.06	8.97
Zm00001d039785_P001	Maize	nucleus	3.47	8.19
Zm00001d011020_P001	Maize	extracellular	2.41	7.88
Zm00001d023295_P001	Maize	nucleus	1.06	7.37
PGSC0003DMT400029394	Potato	nucleus	0.6	5.88
CDX80052	Canola	cytosol	0.45	1.39

Protein Annotations

MapMan:27.1.1	UniProt:A0A1D6J041	ProteinID:AQK41466.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
PANTHER:PTHR12802	PANTHER:PTHR12802:SF43	UniParc:UPI0008450C1D	EnsemblPlantsGene:Zm00001d024546	EnsemblPlants:Zm00001d024546_P001	EnsemblPlants:Zm00001d024546_T001
SEG:seg	:	:	:	:	:

Description

late hypocotyl elongation protein ortholog1 circadian clock associated2

Coordinates

chr10:-:77700138..77703390

Molecular Weight (calculated)

71685.9 Da

IEP (calculated)

5.571

GRAVY (calculated)

-0.754

Length

663 amino acids

Sequence
(BLAST)

001: MPARGEGRPA KERVDQLEKE AINNGTSPGQ AHDIDIPPPR PKRKANSPYP RKSGLSSETP TKELPSDKST KPNMPLSNEN VLMAGDASLQ KFQRKELSGK
101: ESCSEVLNLF RDAPSPSFSS VNKSSSNHGA PIEASKTKIR DMTIMENSSL NPNMQEDVKE INDQEMERLN GTQISSKCEH SHEGYLDISM QQMKLKPESV
201: ETTYVDKQTA RASHSLAERT GTTSIPVTAT EETHSVLTSD QVGINGSMNP SIHPMFPADP KFDSSATPQP FPHNYAAFAP MMQCNCNQDT HRSLVNMSST
301: FSSMLVSTLL SNPAIHAAAR LAASYWPAAE GNTPIDPNQE NLADGVQGRS IGSPPSMASI VAATVAAASA WWATQGLLPF FAPPMAFSFV PAPSAAFPTV
401: DVPRPSEKDR DCPAENAQKE CQEARKQGQF EGFRVAASSE YDGSGKGEVS VHTELKISPV QNADATSAAG ADTTDAFMNK KKQDRSSCGS NTPSSSDVDV
501: DNVPEKEGNG NEKAKQASCS NSSAGDTNHR RFRSSGSTSD SWKEVSEEGR LAFHALFSRE KLPQSFSPPQ AEGSKEVGKE EEDEVTTVAV DLNKSTTSID
601: HDLDTIGEPR ASFPNELSPL KLKLRRTGFK PYKRCSVEAK ENRVPASDEV GTKRIRLDSE AST

Best Arabidopsis Sequence Match ( AT1G01060.5 )
(BLAST)

001: MEELGNELKN ILGQRLLFRS EVMHKSSSQS HPYGNQTSLP YRTGHEVTLS SLPRKIRFGK AHSFWFTFQL EKEAEVKGIP VCQALDIEIP PPRPKRKPNT
101: PYPRKPGNNG TSSSQVSSAK DAKLVSSASS SQLNQAFLDL EKMPFSEKTS TGKENQDENC SGVSTVNKYP LPTKQVSGDI ETSKTSTVDN AVQDVPKKNK
201: DKDGNDGTTV HSMQNYPWHF HADIVNGNIA KCPQNHPSGM VSQDFMFHPM REETHGHANL QATTASATTT ASHQAFPACH SQDDYRSFLQ ISSTFSNLIM
301: STLLQNPAAH AAATFAASVW PYASVGNSGD SSTPMSSSPP SITAIAAATV AAATAWWASH GLLPVCAPAP ITCVPFSTVA VPTPAMTEMD TVENTQPFEK
401: QNTALQDQNL ASKSPASSSD DSDETGVTKL NADSKTNDDK IEEVVVTAAV HDSNTAQKKN LVDRSSCGSN TPSGSDAETD ALDKMEKDKE DVKETDENQP
501: DVIELNNRKI KMRDNNSNNN ATTDSWKEVS EEGRIAFQAL FARERLPQSF SPPQVAENVN RKQSDTSMPL APNFKSQDSC AADQEGVVMI GVGTCKSLKT
601: RQTGFKPYKR CSMEVKESQV GNINNQSDEK VCKRLRLEGE AST

Arabidopsis Description

LHYLHY1 [Source:UniProtKB/TrEMBL;Acc:A0A178W761]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.