CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030496.1-P	Field mustard	nucleus	99.49	99.49
CDX80750	Canola	nucleus	92.32	95.41
CDY64825	Canola	cytosol, nucleus, plastid	22.35	83.44
PGSC0003DMT400029394	Potato	nucleus	9.04	77.94
AT1G01060.7	Thale cress	nucleus	74.74	67.91
CDX90004	Canola	nucleus	67.75	65.3
CDY15205	Canola	nucleus	68.43	64.26
CDX80051	Canola	nucleus	38.4	40.76
KRH47757	Soybean	nucleus	51.19	40.0
KRH06339	Soybean	nucleus	50.85	39.73
VIT_15s0048g02410.t01	Wine grape	nucleus	50.51	38.39
KRH68974	Soybean	nucleus	48.63	38.1
Solyc10g005080.2.1	Tomato	nucleus	48.63	37.4
Os08t0157600-01	Rice	nucleus	43.69	35.6
KRG97259	Soybean	nucleus, plastid	49.49	35.41
HORVU7Hr1G070870.2	Barley	nucleus	41.81	34.17
Zm00001d049543_P003	Maize	nucleus	41.47	33.75
EES13385	Sorghum	nucleus	43.0	33.73
GSMUA_Achr1P06360_001	Banana	nucleus	40.44	32.64
TraesCS7A01G299400.3	Wheat	nucleus	41.13	32.31
TraesCS7B01G188000.1	Wheat	nucleus	40.61	32.16
TraesCS7D01G295400.1	Wheat	nucleus	40.96	32.13
CDY16939	Canola	nucleus	15.7	30.67
CDY26169	Canola	nucleus	16.21	30.25
CDY38566	Canola	nucleus	16.55	30.22
CDY26997	Canola	nucleus	16.21	29.59
CDY41563	Canola	nucleus	37.88	29.52
Zm00001d024546_P001	Maize	nucleus	33.11	29.26
GSMUA_Achr10P...	Banana	nucleus	29.01	28.15
CDY19206	Canola	nucleus	17.24	27.9
CDX69388	Canola	nucleus	17.24	27.01
CDY02714	Canola	nucleus	16.72	26.56
CDX85462	Canola	nucleus	16.89	26.54
CDX70747	Canola	nucleus	16.21	26.32
CDX78737	Canola	nucleus	16.21	26.03
CDX90039	Canola	plastid	11.6	25.19
CDY52837	Canola	nucleus	13.14	25.16
CDY56155	Canola	nucleus	13.48	24.46
CDY15171	Canola	nucleus	11.26	24.44
CDX80840	Canola	nucleus	11.26	24.44
CDY11228	Canola	nucleus	11.26	23.91
CDY07188	Canola	nucleus	12.12	23.83
CDY41299	Canola	nucleus	11.43	23.59
CDX70341	Canola	nucleus	11.43	23.51
CDY48515	Canola	nucleus	12.12	23.2
CDY51831	Canola	vacuole	13.48	22.7
CDY44719	Canola	nucleus	11.77	22.7
CDY41598	Canola	nucleus	11.6	22.59
CDY27841	Canola	nucleus	10.75	22.03
CDY10419	Canola	nucleus	11.6	12.73
CDX80052	Canola	cytosol	0.51	1.39

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.1	GO:A0A078JBQ0	UniProt:A0A078JBQ0	EnsemblPlants:CDY61862
ProteinID:CDY61862	ProteinID:CDY61862.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00034511001
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR12802	PANTHER:PTHR12802:SF82	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI0004EEB154	SEG:seg	:	:	:	:

Description

BnaAnng17890DBnaAnng17890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JBQ0]

Coordinates

chrLK034052:-:21050..29849

Molecular Weight (calculated)

64232.0 Da

IEP (calculated)

6.111

GRAVY (calculated)

-0.900

Length

586 amino acids

Sequence
(BLAST)

001: MDTNTSDGPG EELLTKARKP YTITKQRERW TEDEHDRFLE ALRLYGRAWQ RIQEHIGTKT AVQIRSHAQK FFTKLEKEAE AKGIKALDIE IPPPRPKRKP
101: NAPYPRKPGP SSSQAKQLVS SSECNQQAFL DLEKVPLPEK ISTGKENQEE NCSGVNKYPL PNKVVTPGKR KTFMESSDPS LRKASADNET SKASNVDNNV
201: VHEKNKDRDD DDDDDDDGGL HSARHHPATT TSPSAATTTT SHQAFPAFPF QHDYRSFLHM SSTFSNLIMS TLLQNPAAHA AATFAASAWP FTTNAGDSST
301: QMSSSPPTIA AIVAATVAAA TAWWASHGLL PTPVPLPAVP VPTPAAMDNV GNDHLEKQST AFQEQNMASK SPDSSSDDSD ETGITKIKAD GDKEEVVAAL
401: QDSNVSHKKN PVDRSSCGSN TPSGSDVETD ALEKEKEADA NQPSVIELSN RRSKIRDNNN NQTTDSWKEV SQGGRIAFQA LFARERLPQS FSPPQVEENV
501: NGKQISDTSM PLAHNNLNKI QDSCKADQES AVDEEPGKSL KMRETGFKPY KRCSMEAKES QVGNANNHND EKVCCKRLRL EAEAST

Best Arabidopsis Sequence Match ( AT1G01060.4 )
(BLAST)

001: MDTNTSGEEL LAKARKPYTI TKQRERWTED EHERFLEALR LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEAEVKG IPVCQALDIE IPPPRPKRKP
101: NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK TSTGKENQDE NCSGVSTVNK YPLPTKVSGD IETSKTSTVD NAVQDVPKKN
201: KDKDGNDGTT VHSMQNYPWH FHADIVNGNI AKCPQNHPSG MVSQDFMFHP MREETHGHAN LQATTASATT TASHQAFPAC HSQDDYRSFL QISSTFSNLI
301: MSTLLQNPAA HAAATFAASV WPYASVGNSG DSSTPMSSSP PSITAIAAAT VAAATAWWAS HGLLPVCAPA PITCVPFSTV AVPTPAMTEM DTVENTQPFE
401: KQNTALQDQN LASKSPASSS DDSDETGVTK LNADSKTNDD KIEEVVVTAA VHDSNTAQKK NLVDRSSCGS NTPSGSDAET DALDKMEKDK EDVKETDENQ
501: PDVIELNNRK IKMRDNNSNN NATTDSWKEV SEEGRIAFQA LFARERLPQS FSPPQVAENV NRKQSDTSMP LAPNFKSQDS CAADQEGVVM IGVGTCKSLK
601: TRQTGFKPYK RCSMEVKESQ VGNINNQSDE KVCKRLRLEG EAST

Arabidopsis Description

LHYLHY1 [Source:UniProtKB/TrEMBL;Acc:A0A178W761]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.