CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90840
EER91910
EER97857
EES13385	nucleus
KXG36270
OQU82060

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46830.1	EES13385	AT2G46830.1	14978263
AT2G46830.1	EES13385	AT2G46830.1	22715042
AT2G46830.1	EES13385	AT2G46830.1	22715042
AT2G46830.1	EER91910	AT3G60250.1	10535927
AT2G46830.1	KXG36270	AT3G60250.1	10535927
AT2G46830.1	OQU82060	AT3G60250.1	10535927
AT2G46830.1	EER91910	AT3G60250.1	14978263
AT2G46830.1	KXG36270	AT3G60250.1	14978263
AT2G46830.1	OQU82060	AT3G60250.1	14978263
AT2G46830.1	EER91910	AT3G60250.1	9724822
AT2G46830.1	KXG36270	AT3G60250.1	9724822
AT2G46830.1	OQU82060	AT3G60250.1	9724822
AT2G46830.1	EER91910	AT4G17640.1	9724822
AT2G46830.1	KXG36270	AT4G17640.1	9724822
AT2G46830.1	OQU82060	AT4G17640.1	9724822
AT2G46830.1	EER91910	AT5G47080.1	9724822
AT2G46830.1	KXG36270	AT5G47080.1	9724822
AT2G46830.1	OQU82060	AT5G47080.1	9724822
AT2G46830.1	EER90840	AT5G67380.1	14978263
AT2G46830.1	EER97857	AT5G67380.1	14978263
AT2G46830.1	EER90840	AT5G67380.1	9724822
AT2G46830.1	EER97857	AT5G67380.1	9724822

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049543_P003	Maize	nucleus	87.55	90.83
PGSC0003DMT400029394	Potato	nucleus	7.36	80.88
Os08t0157600-01	Rice	nucleus	73.09	75.94
HORVU7Hr1G070870.2	Barley	nucleus	67.87	70.71
TraesCS7D01G295400.1	Wheat	nucleus	67.2	67.2
TraesCS7A01G299400.3	Wheat	nucleus	67.07	67.16
TraesCS7B01G188000.1	Wheat	nucleus	66.13	66.76
CDX80750	Canola	nucleus	32.8	43.21
CDY61862	Canola	nucleus	33.73	43.0
Bra030496.1-P	Field mustard	nucleus	33.6	42.83
GSMUA_Achr1P06360_001	Banana	nucleus	39.63	40.77
CDX90004	Canola	nucleus	32.8	40.3
Bra033291.1-P	Field mustard	nucleus	32.66	40.2
AT1G01060.7	Thale cress	nucleus	34.54	40.0
CDY15205	Canola	nucleus	33.2	39.74
CDX80051	Canola	nucleus	29.32	39.67
KRH06339	Soybean	nucleus	39.36	39.2
AT2G46830.1	Thale cress	nucleus	31.86	39.14
KRH47757	Soybean	nucleus	39.09	38.93
CDY64825	Canola	cytosol, nucleus, plastid	8.03	38.22
KRH68974	Soybean	nucleus	38.15	38.1
VIT_15s0048g02410.t01	Wine grape	nucleus	38.55	37.35
Solyc10g005080.2.1	Tomato	nucleus	37.88	37.14
GSMUA_Achr10P...	Banana	nucleus	28.78	35.6
KRG97259	Soybean	nucleus, plastid	38.42	35.04
KXG31009	Sorghum	nucleus	11.38	30.25
OQU91224	Sorghum	mitochondrion, nucleus	7.63	30.16
CDY41563	Canola	nucleus	29.18	28.99
EES05718	Sorghum	nucleus	17.54	28.79
EES12724	Sorghum	nucleus	16.47	27.77
KXG20957	Sorghum	nucleus	15.8	27.19
EER89043	Sorghum	nucleus	10.17	23.97
KXG20579	Sorghum	nucleus	10.44	23.01
OQU86282	Sorghum	nucleus	8.84	17.05
CDX80052	Canola	cytosol	0.4	1.39

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.1	EntrezGene:8080836	UniProt:C5YHA4	EnsemblPlants:EES13385
ProteinID:EES13385	ProteinID:EES13385.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0007275	GO:GO:0007623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009409	GO:GO:0009628	GO:GO:0009651
GO:GO:0009719	GO:GO:0009723	GO:GO:0009733	GO:GO:0009737	GO:GO:0009739	GO:GO:0009751
GO:GO:0009753	GO:GO:0009791	GO:GO:0009987	GO:GO:0042754	GO:GO:0043433	GO:GO:0044212
GO:GO:0046686	GO:GO:0048574	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF43	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3007G047400	SUPFAM:SSF46689	unigene:Sbi.4786	TIGRFAMs:TIGR01557	UniParc:UPI0001A87427	RefSeq:XP_002443890.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:4745530..4757815

Molecular Weight (calculated)

82000.1 Da

IEP (calculated)

6.095

GRAVY (calculated)

-0.756

Length

747 amino acids

Sequence
(BLAST)

001: MTSTPSDKAN NCCTFPFYFC LFLPDLEMEV NSSGEEMVVK VRKPYTITKQ RERWTEAEHK RFLEALKLYG RAWQRIEEHV GTKTAVQIRS HAQKFFTKLE
101: KEAMTNGTSP GQALDIDIPP PRPKRKPNNP YPRKSGLSSE TPTKDFPNDK SAKPNMPLSN GNVQMAGDAS LQKFQRKELS EKGSCSEVLN LFRDAPSASF
201: SSVNKSSSNH GAPRGVEASK TEIRDMTIME NNSLNPNMQE DVKEISDHEM ERLNSIQISS KCEHSHEGYL DLSMQQMKLK PKSVETTYVD KQTARASHSL
301: AEKNGTASIL VTATEGTHSD QTSDQVGING SINPCIHPML SSDPKFDSSA TPQHFPHNYA AFAPMMQGNC NQDTYRSFVN MSSTFSSMLV STLLSNPAIH
401: AAARLAASYW PAAEGNTLID PNQENPADDV QGRNIGSPPS MASIVAATVA AASAWWATQG LLPFFTPPMA FPFVPAPSAA FPTVDVPRPS EKDRDFPVEN
501: AQKECQEAQK QGQFEGLRVA ASSVSDGSGK GEVSLHTELK ISPVQNADAT PTTGADTSDA FRNKKKQDRS SCGSNTPSSS DVDADNVPEK EDNANEKVKQ
601: ASCSNSSAGD TNHRRFRSSG STSDSWKEVS EEGRLAFDAL FSREKLPQSF SPPQAEDSKE VAKEEENEVT TVAVDLNKNA TSIDHDLDTM DEPRASFPNE
701: LSHLKLKSRR TGFKPYKRCS VEAKENRVPA SDEVGTKRIR LESEAST

Best Arabidopsis Sequence Match ( AT1G01060.4 )
(BLAST)

001: MDTNTSGEEL LAKARKPYTI TKQRERWTED EHERFLEALR LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEAEVKG IPVCQALDIE IPPPRPKRKP
101: NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK TSTGKENQDE NCSGVSTVNK YPLPTKVSGD IETSKTSTVD NAVQDVPKKN
201: KDKDGNDGTT VHSMQNYPWH FHADIVNGNI AKCPQNHPSG MVSQDFMFHP MREETHGHAN LQATTASATT TASHQAFPAC HSQDDYRSFL QISSTFSNLI
301: MSTLLQNPAA HAAATFAASV WPYASVGNSG DSSTPMSSSP PSITAIAAAT VAAATAWWAS HGLLPVCAPA PITCVPFSTV AVPTPAMTEM DTVENTQPFE
401: KQNTALQDQN LASKSPASSS DDSDETGVTK LNADSKTNDD KIEEVVVTAA VHDSNTAQKK NLVDRSSCGS NTPSGSDAET DALDKMEKDK EDVKETDENQ
501: PDVIELNNRK IKMRDNNSNN NATTDSWKEV SEEGRIAFQA LFARERLPQS FSPPQVAENV NRKQSDTSMP LAPNFKSQDS CAADQEGVVM IGVGTCKSLK
601: TRQTGFKPYK RCSMEVKESQ VGNINNQSDE KVCKRLRLEG EAST

Arabidopsis Description

LHYLHY1 [Source:UniProtKB/TrEMBL;Acc:A0A178W761]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.