CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002545_P002	Maize	nucleus	81.04	81.59
Zm00001d026017_P001	Maize	nucleus	78.56	76.82
Os04t0583900-01	Rice	nucleus	60.05	57.45
TraesCS2B01G478700.1	Wheat	nucleus	50.11	53.49
TraesCS2A01G456600.1	Wheat	nucleus	49.66	52.63
TraesCS2D01G456900.1	Wheat	nucleus	49.21	52.4
HORVU2Hr1G104580.2	Barley	nucleus	48.08	46.1
EES05718	Sorghum	nucleus	36.12	35.16
GSMUA_Achr8P13440_001	Banana	nucleus	26.86	31.4
KXG20957	Sorghum	nucleus	26.41	26.96
KXG31009	Sorghum	nucleus	16.7	26.33
Solyc03g098320.2.1	Tomato	nucleus	25.96	25.11
PGSC0003DMT400065850	Potato	nucleus	26.41	25.11
OQU91224	Sorghum	mitochondrion, nucleus	10.61	24.87
KXG20579	Sorghum	nucleus	18.06	23.6
EER89043	Sorghum	nucleus	16.7	23.34
GSMUA_Achr11P...	Banana	nucleus	25.06	23.22
GSMUA_AchrUn_...	Banana	nucleus	23.7	22.48
EES13385	Sorghum	nucleus	27.77	16.47
OQU86282	Sorghum	nucleus	12.87	14.73

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	EntrezGene:8060442	UniProt:C5YEK4	EnsemblPlants:EES12724	ProteinID:EES12724
ProteinID:EES12724.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF45
InterPro:SANT/Myb	SMART:SM00717	EnsemblPlantsGene:SORBI_3006G192100	SUPFAM:SSF46689	unigene:Sbi.6742	TIGRFAMs:TIGR01557
UniParc:UPI0001A877B1	RefSeq:XP_002448396.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:54604469..54606656

Molecular Weight (calculated)

48420.8 Da

IEP (calculated)

7.945

GRAVY (calculated)

-0.675

Length

443 amino acids

Sequence
(BLAST)

001: MARFQARNDQ SPAADHVGHG NFMDHHLKNT LNCGELDLPG GARAPKARKP YTISKQREKW TEDEHKLFLE ALQQHGRAWR RIQEHIGSKT AVQIRSHAQK
101: FFSKVIRESS GDSNSIAAPP QIQIPPPRPK RRPTHPYPRK LGNSVGKGAS AIKQLQKPLL QTQSLSEQEN CSPKSVLSTA QIDSDTLQTE GSGSPASSVY
201: MEDKCLTPST SVALSKDATT SNDVACEIPE GPVLRLFGKR VVVNNLDQQP SSNTGSLQHV ADMELDASAE TPTGGTGELP SHVAEEAKTW CPWLTGTQQI
301: MYYLPQGEVF SMHSACQFLN YGNGSISYVV LNQQTVASNK QQNQPSQVPH SKVTRAEGSW TESITTSSSV AETTQNSDSI ESTKVNNDED KVVPVPGSRK
401: CASTVPACLR GFVPYKKCTA QSKMLQPEAT GEEADREMTR LCL

Best Arabidopsis Sequence Match ( AT5G17300.1 )
(BLAST)

001: MASSPLTANV QGTNASLRNR DEETADKQIQ FNDQSFGGND YAPKVRKPYT ITKERERWTD EEHKKFVEAL KLYGRAWRRI EEHVGSKTAV QIRSHAQKFF
101: SKVAREATGG DGSSVEPIVI PPPRPKRKPA HPYPRKFGNE ADQTSRSVSP SERDTQSPTS VLSTVGSEAL CSLDSSSPNR SLSPVSSASP PAALTTTANA
201: PEELETLKLE LFPSERLLNR ESSIKEPTKQ SLKLFGKTVL VSDSGMSSSL TTSTYCKSPI QPLPRKLSSS KTLPIIRNSQ EELLSCWIQV PLKQEDVENR
301: CLDSGKAVQN EGSSTGSNTG SVDDTGHTEK TTEPETMLCQ WEFKPSERSA FSELRRTNSE SNSRGFGPYK KRKMVTEEEE HEIHLHL

Arabidopsis Description

RVE1Protein REVEILLE 1 [Source:UniProtKB/Swiss-Prot;Acc:F4KGY6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.