CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046974_P002	Maize	nucleus	85.25	85.76
Os06t0669700-01	Rice	nucleus	58.41	80.16
Zm00001d036632_P002	Maize	nucleus	79.35	74.93
TraesCS7B01G372500.1	Wheat	nucleus	74.34	73.9
EER89043	Sorghum	nucleus	62.24	66.56
KXG31009	Sorghum	nucleus	51.33	61.92
GSMUA_Achr7P17560_001	Banana	nucleus	51.33	58.0
KRH08856	Soybean	nucleus	48.67	54.82
Solyc06g036300.2.1	Tomato	nucleus, plastid	48.38	54.49
KRH35235	Soybean	nucleus	49.85	54.17
KRG91589	Soybean	nucleus	50.44	51.98
CDY52837	Canola	nucleus	46.61	51.63
Bra003117.1-P	Field mustard	nucleus	46.61	51.63
Bra029111.1-P	Field mustard	nucleus	48.67	51.56
VIT_16s0050g01180.t01	Wine grape	nucleus	51.03	51.34
CDY56155	Canola	nucleus	48.67	51.08
PGSC0003DMT400074344	Potato	plastid	43.07	50.52
AT5G52660.2	Thale cress	nucleus	48.67	49.85
CDY27841	Canola	nucleus	40.71	48.25
CDY51831	Canola	vacuole	48.97	47.7
KRH38371	Soybean	nucleus	48.38	46.46
OQU91224	Sorghum	mitochondrion, nucleus	20.35	36.51
OQU86282	Sorghum	nucleus	29.5	25.84
EES05718	Sorghum	nucleus	24.48	18.24
EES12724	Sorghum	nucleus	23.6	18.06
KXG20957	Sorghum	nucleus	21.83	17.05
EES13385	Sorghum	nucleus	23.01	10.44

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.6.2	UniProt:A0A194YKS1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	EnsemblPlants:KXG20579	ProteinID:KXG20579	ProteinID:KXG20579.1
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF85
InterPro:SANT/Myb	SMART:SM00717	EnsemblPlantsGene:SORBI_3010G223700	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0007F2BE2E
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:56547847..56551780

Molecular Weight (calculated)

36399.9 Da

IEP (calculated)

8.896

GRAVY (calculated)

-0.541

Length

339 amino acids

Sequence
(BLAST)

001: MVSMSTTPKP LDTAAAVAGG GGGGDEGGGG GGKKQVRGAA AAAAVMAPPP MAVPVPPAAG EEVRKVRKPY TITKSRESWT EPEHDKFLEA LQLFDRDWKK
101: IEAYVGSKTV IQIRSHAQKY FLKVQKNGTG EHLPPPRPKR KAAHPYPQKA SKNDPAVSQA ILSQQQPTQK EQGSVMPMDT ATVRNTNANV AVPSWDNTLA
201: QPFSAGHVQG AVATNNCSSS IESPSGTWPS SEAVEQENVV PPLRAMPDFA RVYSFLGSIF DPDTSGHLQR LKAMDPIDVE TVLLLMRNLS TNLRSPDFEQ
301: HRRLLSSYSY GGGDHVKSEG MENHGSAQSG HLPFLVTSE

Best Arabidopsis Sequence Match ( AT5G52660.1 )
(BLAST)

001: MVSRNSDGYF LDPTGMTVPG LGPSFTAAVS SSSSPTTSST AVAVADVTAM VSSSEEDLSK KIRKPYTITK SRESWTEPEH DKFLEALQLF DRDWKKIEAF
101: IGSKTVIQIR SHAQKYFLKV QKSGTGEHLP PPRPKRKAAH PYPQKAHKNV QLQVPGSFKS TSEPNDPSFM FRPESSSMLM TSPTTAAAAP WTNNAQTISF
201: TPLPKGAGAN NNCSSSSENT PRPRSNRDAR DHGNVGHSLR VLPDFAQVYG FIGSVFDPYA SNHLQKLKKM DPIDVETVLL LMRNLSINLS SPDFEDHRRL
301: LSSYDIGSET ATDHGGVNKT LNKDPPEIST

Arabidopsis Description

RVE6Protein REVEILLE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.