CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38371	Soybean	nucleus	95.35	81.3
KRH35235	Soybean	nucleus	76.74	74.04
KRG91589	Soybean	nucleus	76.74	70.21
VIT_16s0050g01180.t01	Wine grape	nucleus	71.1	63.5
HORVU6Hr1G066000.1	Barley	nucleus	58.14	61.84
TraesCS6D01G239800.1	Wheat	nucleus	58.14	61.19
KXG31009	Sorghum	nucleus	56.81	60.85
TraesCS6B01G266800.3	Wheat	nucleus	57.81	60.84
Os02t0680700-01	Rice	nucleus	58.14	60.14
Solyc06g036300.2.1	Tomato	nucleus, plastid	60.13	60.13
Bra029111.1-P	Field mustard	nucleus	63.79	60.0
GSMUA_Achr5P10280_001	Banana	nucleus	54.15	59.93
Bra003117.1-P	Field mustard	nucleus	60.8	59.8
CDY52837	Canola	nucleus	60.8	59.8
CDY56155	Canola	nucleus	63.79	59.44
Zm00001d017609_P011	Maize	nucleus	53.82	59.34
KRH40382	Soybean	nucleus	56.48	59.23
AT5G52660.2	Thale cress	nucleus	63.12	57.4
KRH06589	Soybean	nucleus	63.12	57.23
CDY27841	Canola	nucleus	54.15	56.99
GSMUA_Achr7P17560_001	Banana	nucleus	55.81	56.0
KRH48063	Soybean	nucleus	61.46	55.89
KRH00849	Soybean	nucleus	56.81	55.52
CDY51831	Canola	vacuole	64.12	55.46
PGSC0003DMT400074344	Potato	plastid	53.16	55.36
HORVU0Hr1G031850.1	Barley	nucleus, plastid	58.14	52.55
Os06t0669700-01	Rice	nucleus	42.52	51.82
KRH32383	Soybean	plastid	50.17	51.36
TraesCS6A01G258600.2	Wheat	nucleus	58.14	51.17
Os06t0105800-02	Rice	nucleus	50.5	51.01
HORVU7Hr1G001830.3	Barley	nucleus	45.18	50.18
KRG95914	Soybean	nucleus	48.17	50.17
TraesCS7A01G470700.1	Wheat	nucleus	56.48	50.0
TraesCS7D01G458000.1	Wheat	nucleus	56.48	49.85
TraesCS7B01G372500.1	Wheat	nucleus	56.15	49.56
TraesCS7D01G014900.2	Wheat	nucleus	46.51	49.47
TraesCS7A01G017600.1	Wheat	nucleus	45.51	49.28
KXG20579	Sorghum	nucleus	54.82	48.67
KRH19794	Soybean	nucleus	47.84	47.84
EER89043	Sorghum	nucleus	50.17	47.63
KRH67632	Soybean	nucleus	47.18	47.49
TraesCS4A01G474100.2	Wheat	nucleus	47.84	46.6
Zm00001d046974_P002	Maize	nucleus	51.16	45.7
Zm00001d045581_P002	Maize	nucleus	46.18	43.99
GSMUA_Achr1P03720_001	Banana	nucleus	49.83	43.6
Zm00001d036632_P002	Maize	nucleus	51.83	43.45
GSMUA_Achr1P06480_001	Banana	plastid	59.14	41.4
HORVU7Hr1G107550.3	Barley	nucleus	55.15	39.24
GSMUA_Achr1P15370_001	Banana	mitochondrion	13.95	34.43
KRH20042	Soybean	nucleus	24.25	25.44
KRG98008	Soybean	nucleus	24.92	20.78
KRH17280	Soybean	nucleus	27.24	18.81
KRH72927	Soybean	nucleus	26.25	18.12
KRH09476	Soybean	nucleus	26.91	16.98
KRH38938	Soybean	nucleus	25.58	16.52
KRH68974	Soybean	nucleus	26.91	10.83
KRH06339	Soybean	nucleus	25.58	10.27
KRH47757	Soybean	nucleus	24.92	10.0
KRG97259	Soybean	nucleus, plastid	26.58	9.77

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100783949	MapMan:15.5.2.2	MapMan:27.1.6.2	EMBL:ACUP02010212	EMBL:BT093234
UniProt:C6T715	EnsemblPlantsGene:GLYMA_16G178700	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:IPR017930	EnsemblPlants:KRH08856	ProteinID:KRH08856	ProteinID:KRH08856.1	InterPro:Myb_dom	InterPro:Myb_dom_plants
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF83	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0001B1637D	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr16:+:33941617..33948775

Molecular Weight (calculated)

33552.9 Da

IEP (calculated)

9.707

GRAVY (calculated)

-0.636

Length

301 amino acids

Sequence
(BLAST)

001: MVSKNPNPPE GFYLDPSGGM PLPGMPPFAS VSAATAANSP EDAAKKIRKP YTITKSRENW TEPEHDKFLE AIQLFDRDWK KIEAFVGSKS VIQIRSHAQK
101: YFLKVQKSGT SEHLPPPRPK RKAAHPYPQK ASKNAPVLSQ VSGRFQSSSA LLEPGYILKN DAPPMLKTPI MNTVASSWSN NTLQTANLSP VTKVNNPCSS
201: GESTPKVWPV GESNCQGNKI HPLRVLPDFT QVYGFIGSVF DPNATEHLQK LKKMDRIDVE TVLLLMRNLS INLTSPDFED HRKLLSSYEV EPERDDNYQR
301: G

Best Arabidopsis Sequence Match ( AT5G52660.2 )
(BLAST)

001: MVSRNSDGYF LDPTGMTVPG LGPSFTAAVS SSSSPTTSST AVAVADVTAM VSSSEEDLSK KIRKPYTITK SRESWTEPEH DKFLEALQLF DRDWKKIEAF
101: IGSKTVIQIR SHAQKYFLKV QKSGTGEHLP PPRPKRKAAH PYPQKAHKNV QLQVPGSFKS TSEPNDPSFM FRPESSSMLM TSPTTAAAAP WTNNAQTISF
201: TPLPKAGAGA NNNCSSSSEN TPRPRSNRDA RDHGNVGHSL RVLPDFAQVY GFIGSVFDPY ASNHLQKLKK MDPIDVETVL LLMRNLSINL SSPDFEDHRR
301: LLSSYDIGSE TATDHGGVNK TLNKDPPEIS T

Arabidopsis Description

RVE6Protein REVEILLE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.