CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40382	Soybean	nucleus	79.55	85.37
KRH06589	Soybean	nucleus	71.43	66.27
KRH48063	Soybean	nucleus	69.16	64.35
KRH08856	Soybean	nucleus	55.52	56.81
Bra033257.1-P	Field mustard	plastid	49.35	56.3
CDX90039	Canola	plastid	49.35	56.3
CDY15171	Canola	nucleus	48.7	55.56
KRH35235	Soybean	nucleus	53.9	53.21
AT1G01520.3	Thale cress	plastid	48.05	51.57
AT4G01280.2	Thale cress	nucleus	50.32	51.16
KRG91589	Soybean	nucleus	54.22	50.76
CDY07188	Canola	nucleus	47.73	49.33
KRH32383	Soybean	plastid	46.43	48.64
CDY48515	Canola	nucleus	47.73	48.04
KRH38371	Soybean	nucleus	54.55	47.59
KRG95914	Soybean	nucleus	43.51	46.37
KRH67632	Soybean	nucleus	44.81	46.15
KRH19794	Soybean	nucleus	44.16	45.18
Bra037365.1-P	Field mustard	nucleus	47.4	43.07
KRH20042	Soybean	nucleus	24.68	26.48
KRG98008	Soybean	nucleus	25.0	21.33
KRH17280	Soybean	nucleus	25.97	18.35
KRH72927	Soybean	nucleus	25.0	17.66
KRH09476	Soybean	nucleus	26.95	17.4
KRH38938	Soybean	nucleus	26.3	17.38
KRH68974	Soybean	nucleus	25.97	10.7
KRH06339	Soybean	nucleus	24.68	10.13
KRH47757	Soybean	nucleus	24.03	9.87
KRG97259	Soybean	nucleus, plastid	25.97	9.77

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100791774	MapMan:15.5.2.2	MapMan:27.1.6.2	UniProt:A0A0R0F3M4	EMBL:ACUP02011479
EnsemblPlantsGene:GLYMA_18G237700	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930
EnsemblPlants:KRH00849	ProteinID:KRH00849	ProteinID:KRH00849.1	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF83	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
TIGRFAMs:TIGR01557	UniParc:UPI0006EE045F	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:52631643..52637139

Molecular Weight (calculated)

35197.9 Da

IEP (calculated)

10.280

GRAVY (calculated)

-0.691

Length

308 amino acids

Sequence
(BLAST)

001: MVSLNLNPNP PQTFHFFDPF NMEDQNKKVR KPYTITKSRE NWTDQEHDKF LEALHLFDRD WKKIEAFVGS KTVIQIRSHA QKYFMKVQKN GTSEHVPPPR
101: PKRKAAHPYP QKASKNALTI SQVARPLQSS SALSESSHIY RPDSSSVVRT PVSSVPLPSW VYNVTPPVSL PRVTKDDMVM MSQQINPFSS SNESTPRGWP
201: ISKQTDQGDQ GKPTIAVMPD FAQVYSFIGT VFDPNAINHL QRLKQMDPIN VKTVLLLMRN LSTNLRSPEF ENERRMLSLY YANMEKEKSS SHRSQPLTDR
301: SESVVLSA

Best Arabidopsis Sequence Match ( AT1G01520.1 )
(BLAST)

001: MVTVNPSQAH CLPMKMSLPG FNTLPHTATT IPVSIRSNRT MSFFEDPTKK VRKPYTITKS RENWTEQEHD KFLEALHLFD RDWKKIKAFV GSKTVIQIRS
101: HAQKYFLKVQ KNGTKEHLPP PRPKRKANHP YPQKAPKFTL SSSNALFQHD YLYNTNSHPV ISTTRKHGLV HCDVSIPSSV IKEEFGVSEN CCSTSSSRDK
201: QRTRIVTETN DQESCGKPHR VAPNFAEVYN FIGSVFDPKT TGHVKRLKEM DPINLETVLL LMKNLSVNLT SPEFDEQRKL ISSYNAS

Arabidopsis Description

ASG4 [Source:UniProtKB/TrEMBL;Acc:A0A178W835]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.