CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19794	Soybean	nucleus	88.78	86.71
KRG95914	Soybean	nucleus	75.85	77.16
KRH67632	Soybean	nucleus	76.53	75.25
VIT_08s0040g03220.t01	Wine grape	nucleus	68.37	71.02
PGSC0003DMT400028711	Potato	nucleus	68.71	70.63
Solyc10g084370.1.1	Tomato	nucleus	70.75	70.27
Bra034074.1-P	Field mustard	nucleus	58.84	65.78
AT3G09600.7	Thale cress	nucleus	66.67	65.77
CDY41299	Canola	nucleus	61.56	63.73
CDY41598	Canola	nucleus	62.93	61.46
Bra029778.1-P	Field mustard	nucleus	63.27	61.18
CDY44719	Canola	nucleus	62.93	60.86
CDX80840	Canola	nucleus	55.44	60.37
CDX70341	Canola	nucleus	58.16	60.0
AT5G02840.1	Thale cress	nucleus	59.18	59.39
CDY11228	Canola	nucleus	55.1	58.7
Bra005751.1-P	Field mustard	nucleus	54.76	56.89
Bra009562.1-P	Field mustard	nucleus	58.5	55.13
KRH08856	Soybean	nucleus	51.36	50.17
KRH35235	Soybean	nucleus	52.38	49.36
KRH40382	Soybean	nucleus	46.6	47.74
KRH00849	Soybean	nucleus	48.64	46.43
KRG91589	Soybean	nucleus	51.36	45.9
KRH06589	Soybean	nucleus	51.7	45.78
KRH48063	Soybean	nucleus	50.0	44.41
KRH38371	Soybean	nucleus	52.04	43.34
CDY10419	Canola	nucleus	57.14	31.46
KRH20042	Soybean	nucleus	22.11	22.65
KRG98008	Soybean	nucleus	23.47	19.11
KRH17280	Soybean	nucleus	25.17	16.97
KRH72927	Soybean	nucleus	24.15	16.28
KRH38938	Soybean	nucleus	25.51	16.09
KRH09476	Soybean	nucleus	25.17	15.51
KRH68974	Soybean	nucleus	26.53	10.43
KRH06339	Soybean	nucleus	25.51	10.0
KRH47757	Soybean	nucleus	24.83	9.73
KRG97259	Soybean	nucleus, plastid	26.87	9.65

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.6.2	EntrezGene:778050	EMBL:ACUP02006116	EnsemblPlantsGene:GLYMA_10G048500
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	UniProt:I1L8Q8	InterPro:IPR017930
EnsemblPlants:KRH32383	ProteinID:KRH32383	ProteinID:KRH32383.1	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF81	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
TIGRFAMs:TIGR01557	UniParc:UPI00023C875B	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:4363155..4368939

Molecular Weight (calculated)

32094.9 Da

IEP (calculated)

7.728

GRAVY (calculated)

-0.486

Length

294 amino acids

Sequence
(BLAST)

001: MNSTTNTSNS QSMAAAAPSD GSGKKVRKPY TITKSRESWT EEEHDKFLEA LQLFDRDWKK IEDFVGSKTV IQIRSHAQKY FLKVQKNGTV AHVPPPRPKR
101: KAAHPYPQKA SKNVLVPLPA SIGYASSRNT LAPGFASWDE TSLLMNAGAD KPMTCQDELN NLHHGNEADI GSKGIAQITN SSLSGVGNST GALPTSEIPK
201: QGKQAPVLHG LPDFAEVYSF IGSVFDPETN DHVQKLKEMD PINFETVLLL MRNLTVNLSS PDFEPIKKVL STYDVNTVAV GIDVKTNDLS CQTA

Best Arabidopsis Sequence Match ( AT3G09600.7 )
(BLAST)

001: MSSSPSRNPT NAEAPPPPPT STDAVAEGSS KKVRKPYTIT KSRESWTEEE HDKFLEALQL FDRDWKKIED FVGSKTVIQI RSHAQKYFLK VQKNGTLAHV
101: PPPRPKRKAA HPYPQKASKN AQMPLQVSTS FTTTRNGDMP GYASWDDASM LLNRVISPQH ELATLRGAEA DIGSKGLLNV SSPSTSGMGS SSRTVSGSEI
201: VRKAKQPPVL HGVPDFAEVY NFIGSVFDPE TRGHVEKLKE MDPINFETVL LLMRNLTVNL SNPDLESTRK VLLSYDNVTT ELPSVVSLVK NSTSDKSA

Arabidopsis Description

RVE8Protein REVEILLE 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWU3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.