Factsheet for Bra005751.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11228	Canola	nucleus	94.35	96.74
AT5G02840.1	Thale cress	nucleus	83.04	80.2
Bra009562.1-P	Field mustard	nucleus	84.45	76.6
Bra034074.1-P	Field mustard	nucleus	59.36	63.88
Bra029778.1-P	Field mustard	nucleus	63.25	58.88
VIT_08s0040g03220.t01	Wine grape	nucleus	57.24	57.24
Solyc10g084370.1.1	Tomato	nucleus	57.95	55.41
PGSC0003DMT400028711	Potato	nucleus	55.83	55.24
KRH32383	Soybean	plastid	56.89	54.76
KRH19794	Soybean	nucleus	56.89	53.49
KRG95914	Soybean	nucleus	54.42	53.29
KRH67632	Soybean	nucleus	56.18	53.18
Bra033257.1-P	Field mustard	plastid	44.88	47.04
Bra003117.1-P	Field mustard	nucleus	47.7	44.12
Bra029111.1-P	Field mustard	nucleus	48.06	42.5
Bra037365.1-P	Field mustard	nucleus	43.46	36.28
Bra024430.1-P	Field mustard	mitochondrion, nucleus	16.25	21.5
Bra039503.1-P	Field mustard	nucleus	22.26	18.92
Bra008563.1-P	Field mustard	nucleus	23.67	18.87
Bra006394.1-P	Field mustard	nucleus	24.03	18.68
Bra023610.1-P	Field mustard	nucleus	24.38	18.6
Bra025914.1-P	Field mustard	nucleus	20.49	17.37
Bra004503.1-P	Field mustard	nucleus	22.61	11.59
Bra030496.1-P	Field mustard	nucleus	23.67	11.43
Bra033291.1-P	Field mustard	nucleus	24.38	11.37
Bra004502.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.6.2	EnsemblPlantsGene:Bra005751	EnsemblPlants:Bra005751.1	EnsemblPlants:Bra005751.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4CNG3
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF81
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000253FB1B	SEG:seg

Description

AT5G02840 (E=1e-100) LCL1 | LCL1 (LHY/CCA1-like 1); DNA binding / transcription factor

Coordinates

chrA03:-:433865..435637

Molecular Weight (calculated)

31130.5 Da

IEP (calculated)

4.963

GRAVY (calculated)

-0.512

Length

283 amino acids

Sequence
(BLAST)

001: MTSSLSSNPV VSEERPAETS TDLTETTTEA PEKKVRKAYT ISKSRQSWTE GEHDKFLEAL QLFDRDWKKI EDFVGSKTVI QIRSHAQKYF LKVEKNGTFA
101: HVPPPRPKRK AAHPYPQKAA KSAQMSLHVS MSFPPEISNL SGYGSWDDDT SALLSIAVSE VILPKDEIDT LFVIELNGST SAVSPSASGI GSSSRTLPDS
201: EGLTPVNQAP SMQGLPDFAE VYNFIGSVFD PDSKGRMKKL KEMDPINFET VLLLMRNLTV NMSNPDFEPS SDAAEEGSEH LSS

Best Arabidopsis Sequence Match ( AT5G02840.1 )
(BLAST)

001: MTSTNPVVAE VIPAETSTDA TETTIATTEA GEAPEKKVRK AYTITKSRES WTEGEHDKFL EALQLFDRDW KKIEDFVGSK TVIQIRSHAQ KYFLKVQKNG
101: TLAHVPPPRP KRKAAHPYPQ KASKNAQMSL HVSMSFPTQI NNLPGYTPWD DDTSALLNIA VSGVIPPEDE LDTLCGAEVD VGSNDMISET SPSASGIGSS
201: SRTLSDSKGL RLAKQAPSMH GLPDFAEVYN FIGSVFDPDS KGRMKKLKEM DPINFETVLL LMRNLTVNLS NPDFEPTSEY VDAAEEGHEH LSS

Arabidopsis Description

RVE4LCL1 [Source:UniProtKB/TrEMBL;Acc:A0A178U8Z5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.