Factsheet for VIT_08s0040g03220.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028711	Potato	nucleus	71.38	70.63
Solyc10g084370.1.1	Tomato	nucleus	72.79	69.59
KRH32383	Soybean	plastid	71.02	68.37
KRG95914	Soybean	nucleus	69.26	67.82
KRH67632	Soybean	nucleus	68.9	65.22
KRH19794	Soybean	nucleus	67.14	63.12
Bra034074.1-P	Field mustard	nucleus	56.89	61.22
AT3G09600.7	Thale cress	nucleus	64.31	61.07
CDY41299	Canola	nucleus	60.42	60.21
CDX80840	Canola	nucleus	57.24	60.0
CDX70341	Canola	nucleus	59.36	58.95
AT5G02840.1	Thale cress	nucleus	60.78	58.7
CDY44719	Canola	nucleus	62.9	58.55
CDY11228	Canola	nucleus	56.89	58.33
Bra029778.1-P	Field mustard	nucleus	62.54	58.22
CDY41598	Canola	nucleus	61.48	57.81
Bra005751.1-P	Field mustard	nucleus	57.24	57.24
Bra009562.1-P	Field mustard	nucleus	60.07	54.49
VIT_15s0046g02260.t01	Wine grape	nucleus	54.42	46.95
VIT_16s0050g01180.t01	Wine grape	nucleus	53.36	44.81
CDY10419	Canola	nucleus	59.01	31.27
VIT_04s0079g00410.t01	Wine grape	nucleus	29.68	17.54
VIT_15s0048g02410.t01	Wine grape	nucleus	27.56	10.12

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100249962	wikigene:100249962	MapMan:15.5.2.2	MapMan:27.1.6.2	ProteinID:CBI32620
ProteinID:CBI32620.3	UniProt:D7TQA0	EMBL:FN596008	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100249962	wikigene:LOC100249962	InterPro:Myb_dom	InterPro:Myb_dom_plants
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF81	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	TIGR:TC67300	TIGRFAMs:TIGR01557	UniParc:UPI00015CA54E	ArrayExpress:VIT_08s0040g03220	EnsemblPlantsGene:VIT_08s0040g03220
EnsemblPlants:VIT_08s0040g03220.t01	unigene:Vvi.11110	RefSeq:XP_002275037	RefSeq:XP_002275037.1	:	:

Description

No Description!

Coordinates

chr8:-:14149593..14165460

Molecular Weight (calculated)

31192.0 Da

IEP (calculated)

7.214

GRAVY (calculated)

-0.453

Length

283 amino acids

Sequence
(BLAST)

001: MASLTSGDGS GKKVRKPYTI TKSRESWTEE EHDKFLEALQ LFDRDWKKIE DFVGSKTVIQ IRSHAQKYFL KVQKNGTVAH VPPPRPKRKA IHPYPQKAPT
101: NVLVPLQASV AYPSSLHSLV PVYSPWDETS MLINTATSGI APPQDEYSLH MVEADIGSKG VAKISNSDVC GIGRSSRTLP SSELQKQRKQ GSALHGIPDF
201: SEVYTFIGSV FDPDSEGQIE KLKEMDPINF ETVLLLMRNL TINLSSPDFE PIREVLSSYD ANSKSVGVDA GSPGKVQSTD LSC

Best Arabidopsis Sequence Match ( AT3G09600.7 )
(BLAST)

001: MSSSPSRNPT NAEAPPPPPT STDAVAEGSS KKVRKPYTIT KSRESWTEEE HDKFLEALQL FDRDWKKIED FVGSKTVIQI RSHAQKYFLK VQKNGTLAHV
101: PPPRPKRKAA HPYPQKASKN AQMPLQVSTS FTTTRNGDMP GYASWDDASM LLNRVISPQH ELATLRGAEA DIGSKGLLNV SSPSTSGMGS SSRTVSGSEI
201: VRKAKQPPVL HGVPDFAEVY NFIGSVFDPE TRGHVEKLKE MDPINFETVL LLMRNLTVNL SNPDLESTRK VLLSYDNVTT ELPSVVSLVK NSTSDKSA

Arabidopsis Description

RVE8Protein REVEILLE 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWU3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.