Factsheet for VIT_04s0079g00410.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20042	Soybean	nucleus	34.86	58.19
KRG98008	Soybean	nucleus	40.08	53.19
KRH17280	Soybean	nucleus	47.39	52.06
KRH72927	Soybean	nucleus	46.35	50.92
PGSC0003DMT400055263	Potato	nucleus	45.51	45.8
Solyc02g036370.2.1	Tomato	nucleus	44.26	45.69
AT5G37260.1	Thale cress	nucleus	26.72	44.6
CDY38566	Canola	nucleus	26.72	39.88
CDY26997	Canola	nucleus	26.3	39.25
Bra039503.1-P	Field mustard	nucleus	26.72	38.44
VIT_08s0040g03220.t01	Wine grape	nucleus	17.54	29.68
VIT_16s0050g01180.t01	Wine grape	nucleus	19.83	28.19
VIT_15s0046g02260.t01	Wine grape	nucleus	19.0	27.74
VIT_15s0048g02410.t01	Wine grape	nucleus	29.85	18.55

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100263252	wikigene:100263252	MapMan:15.5.2.2	EMBL:AM485008	ProteinID:CAN68733
ProteinID:CAN68733.1	ProteinID:CBI27347	ProteinID:CBI27347.3	UniProt:D7TA25	EMBL:FN595753	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100263252	wikigene:LOC100263252
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF60
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0001BE2E5D	ArrayExpress:VIT_04s0079g00410
EnsemblPlantsGene:VIT_04s0079g00410	EnsemblPlants:VIT_04s0079g00410.t01	unigene:Vvi.8429	RefSeq:XP_002267976	RefSeq:XP_002267976.2	SEG:seg

Description

No Description!

Coordinates

chr4:+:10884890..10889043

Molecular Weight (calculated)

53342.2 Da

IEP (calculated)

6.797

GRAVY (calculated)

-0.746

Length

479 amino acids

Sequence
(BLAST)

001: MTVEDQSGGS RSNTFLSAGN LISLDAGTHS LTAAELKEQF SCRDDLAPKA RKPYTITKQR ERWTEEEHKK FLEALKLYGR AWRRIEEHVG TKTAVQIRSH
101: AQKFFSKVVR ETSGGNTNSA EPIEIPPPRP KRKPVHPYPR KLVHPLRKGI SVLEPPVRSV SPNFSASEQE NQSPTSVLSA VGSETLGSTL SNTQNGSPSP
201: VSSAAGVNPD RMFLPELNPP TEENASPSPV LTTSSSVPDE PLPMKFELFP QEIFAKECSV EEASTRTLKL FGRTVLVTDS HRPSSPTTSK SQPSDINNEG
301: MHVETLPWNS TPTESSPENS SFSWSHLQPQ PSGAFYYMHF QKEDSNCVEA GTTAPLPWWT FYGGIPIPFL PLHHQDSIKA HEDTKFAETH DKEIQKEGSW
401: TGSNTGSSHQ PYLDTMEKES DSAFELKLSE RSAFSRGRTN TDKCVKGFMP YKRCLAERDT QSSIIIGNER EEQRIRLCL

Best Arabidopsis Sequence Match ( AT5G17300.1 )
(BLAST)

001: MASSPLTANV QGTNASLRNR DEETADKQIQ FNDQSFGGND YAPKVRKPYT ITKERERWTD EEHKKFVEAL KLYGRAWRRI EEHVGSKTAV QIRSHAQKFF
101: SKVAREATGG DGSSVEPIVI PPPRPKRKPA HPYPRKFGNE ADQTSRSVSP SERDTQSPTS VLSTVGSEAL CSLDSSSPNR SLSPVSSASP PAALTTTANA
201: PEELETLKLE LFPSERLLNR ESSIKEPTKQ SLKLFGKTVL VSDSGMSSSL TTSTYCKSPI QPLPRKLSSS KTLPIIRNSQ EELLSCWIQV PLKQEDVENR
301: CLDSGKAVQN EGSSTGSNTG SVDDTGHTEK TTEPETMLCQ WEFKPSERSA FSELRRTNSE SNSRGFGPYK KRKMVTEEEE HEIHLHL

Arabidopsis Description

RVE1Protein REVEILLE 1 [Source:UniProtKB/Swiss-Prot;Acc:F4KGY6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.