Factsheet for VIT_15s0048g02410.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g00080.t01
VIT_07s0129g00410.t01
VIT_15s0048g02410.t01	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46830.1	VIT_15s0048g02410.t01	AT2G46830.1	14978263
AT2G46830.1	VIT_15s0048g02410.t01	AT2G46830.1	22715042
AT2G46830.1	VIT_15s0048g02410.t01	AT2G46830.1	22715042
AT2G46830.1	VIT_02s0012g00080.t01	AT3G60250.1	10535927
AT2G46830.1	VIT_02s0012g00080.t01	AT3G60250.1	14978263
AT2G46830.1	VIT_02s0012g00080.t01	AT3G60250.1	9724822
AT2G46830.1	VIT_07s0129g00410.t01	AT5G67380.1	14978263
AT2G46830.1	VIT_07s0129g00410.t01	AT5G67380.1	9724822

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029394	Potato	nucleus	7.39	83.82
KRH68974	Soybean	nucleus	61.74	63.64
KRH06339	Soybean	nucleus	61.48	63.2
KRH47757	Soybean	nucleus	60.96	62.67
KRG97259	Soybean	nucleus, plastid	61.22	57.63
Solyc10g005080.2.1	Tomato	nucleus	56.81	57.48
AT1G01060.7	Thale cress	nucleus	43.19	51.63
CDX90004	Canola	nucleus	40.6	51.48
Bra033291.1-P	Field mustard	nucleus	40.47	51.4
CDX80051	Canola	nucleus	36.58	51.09
CDY15205	Canola	nucleus	41.12	50.8
CDY61862	Canola	nucleus	38.39	50.51
Bra030496.1-P	Field mustard	nucleus	38.26	50.34
CDX80750	Canola	nucleus	36.32	49.38
AT2G46830.1	Thale cress	nucleus	38.52	48.85
GSMUA_Achr1P06360_001	Banana	nucleus	41.25	43.8
CDY64825	Canola	cytosol, nucleus, plastid	8.82	43.31
Os08t0157600-01	Rice	nucleus	37.22	39.92
Zm00001d049543_P003	Maize	nucleus	37.09	39.72
HORVU7Hr1G070870.2	Barley	nucleus	36.71	39.47
EES13385	Sorghum	nucleus	37.35	38.55
TraesCS7A01G299400.3	Wheat	nucleus	36.32	37.53
TraesCS7B01G188000.1	Wheat	nucleus	35.93	37.43
TraesCS7D01G295400.1	Wheat	nucleus	36.19	37.35
GSMUA_Achr10P...	Banana	nucleus	28.4	36.26
CDY41563	Canola	nucleus	35.28	36.17
Zm00001d024546_P001	Maize	nucleus	30.09	34.99
VIT_04s0079g00410.t01	Wine grape	nucleus	18.55	29.85
VIT_08s0040g03220.t01	Wine grape	nucleus	10.12	27.56
VIT_15s0046g02260.t01	Wine grape	nucleus	10.89	25.61
VIT_16s0050g01180.t01	Wine grape	nucleus	11.02	25.22
CDX80052	Canola	cytosol	0.26	0.93

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100250535	wikigene:100250535	MapMan:15.5.2.2	MapMan:27.1.1	EMBL:AM467028
ProteinID:CAN81352	ProteinID:CAN81352.1	ProteinID:CCB61311	ProteinID:CCB61311.1	UniProt:F6I2Z4	EMBL:FN596739
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100250535
wikigene:LOC100250535	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802
PANTHER:PTHR12802:SF43	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGR:TC54693	TIGR:TC61579
TIGR:TC62625	TIGR:TC64891	TIGRFAMs:TIGR01557	UniParc:UPI0001984E23	ArrayExpress:VIT_15s0048g02410	EnsemblPlantsGene:VIT_15s0048g02410
EnsemblPlants:VIT_15s0048g02410.t01	unigene:Vvi.2856	RefSeq:XP_002267720	RefSeq:XP_002267720.1	RefSeq:XP_010661511.1	RefSeq:XP_010661512.1
RefSeq:XP_019081159.1	RefSeq:XP_019081160.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr15:-:16591114..16601303

Molecular Weight (calculated)

84197.3 Da

IEP (calculated)

5.897

GRAVY (calculated)

-0.822

Length

771 amino acids

Sequence
(BLAST)

001: MDIYSSGEDL IIKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFS KLEKEALVKG VPIGQAIDIE IPPPRPKRKP
101: SNPYPRKTGV AAPTLQAGTK DGKLLASVSS SHPGKQILDL EKDPLPERPS GDEKPGNENE NQDEDNCSEV FTLFQEAPCT SMSSANKNSI PTPVPLRNSC
201: TFREFVPLMK EGSNQDETNE SYITVEPKGN QKLDKPDFRQ KAQDSGMSKA SNLENSHPSH EKLVQAEKTD EPSQSENFGS QPKNEMQAAQ NFPRHVPVHV
301: LDGSLGTCTQ APSSEMTYGE SLVHQIGIHG HPNLFQNPAA SAATEHQNNG SRSSIHQSFP TFHTPFGPIR SNQDDYRSFL QISSTFSSLI VSTLLQNPAA
401: HAAASFAATF WPCSNMEASA DSPSGTIGGF PARQINPAPS MAAIAAATVA AATAWWAAHG VLPLCAPLHT GFTCAPASAT SVPPTNTGQA PAANTERREN
501: TPQDQQLDLE CSEALQAQHS ASKSPAMSSS DSEESGGAKP NTESTAPDNE KNTTAVTELN DPTKMKSRKQ VDRSSCGSNT PSSSEVETDA LEKHENGEEE
601: CKEADVNQAA GEANNRRCRS TSILNESWKE VSEEGRLAFR ALFSREVLPQ SFSPPHDLKN KGLQNKDFIE NEQGGDEKHE NALQLDLNSK AWGPCSSHQD
701: VEKNGLMEND NREEGLLTIG LGYGKIKGRR TGFKPYKRCS VEAIDSRVTN CCSQGEEKGP KRIRLEGDVS T

Best Arabidopsis Sequence Match ( AT1G01060.7 )
(BLAST)

001: MDTNTSGEEL LAKARKPYTI TKQRERWTED EHERFLEALR LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEAEVKG IPVCQALDIE IPPPRPKRKP
101: NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK TSTGKENQDE NCSGVSTVNK YPLPTKQVSG DIETSKTSTV DNAVQDVPKK
201: NKDKDGNDGT TVHSMQNYPW HFHADIVNGN IAKCPQNHPS GMVSQDFMFH PMREETHGHA NLQATTASAT TTASHQAFPA CHSQDDYRSF LQISSTFSNL
301: IMSTLLQNPA AHAAATFAAS VWPYASVGNS GDSSTPMSSS PPSITAIAAA TVAAATAWWA SHGLLPVCAP APITCVPFST VAVPTPAMTE MDTVENTQPF
401: EKQNTALQDQ NLASKSPASS SDDSDETGVT KLNADSKTND DKIEEVVVTA AVHDSNTAQK KNLVDRSSCG SNTPSGSDAE TDALDKMEKD KEDVKETDEN
501: QPDVIELNNR KIKMRDNNSN NNATTDSWKE VSEEGRIAFQ ALFARERLPQ SFSPPQVAEN VNRKQSDTSM PLAPNFKSQD SCAADQEGVV MIGVGTCKSL
601: KTRQTGFKPY KRCSMEVKES QVGNINNQSD EKVCKRLRLE GEAST

Arabidopsis Description

LHYLHY1 [Source:UniProtKB/TrEMBL;Acc:A0A178W761]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.