Factsheet for VIT_07s0129g00410.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 6
cytosol 1
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g00080.t01
VIT_05s0020g04420.t01
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01
VIT_15s0048g02410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G23080.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT2G23080.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT2G23080.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT2G23080.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592
AT2G23080.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592
AT2G23080.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT2G23080.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592
AT5G67380.1	VIT_15s0048g02410.t01	AT2G46830.1	14978263
AT5G67380.1	VIT_15s0048g02410.t01	AT2G46830.1	9724822
AT5G67380.1	VIT_02s0012g00080.t01	AT3G60250.1	10535927

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28388	Soybean	cytosol	80.25	97.6
KRH77093	Soybean	nucleus	80.0	97.3
GSMUA_Achr6P16850_001	Banana	cytosol	79.51	96.7
GSMUA_Achr5P01690_001	Banana	cytosol	79.01	96.1
VIT_18s0001g09320.t01	Wine grape	cytosol	78.77	95.8
GSMUA_Achr10P...	Banana	cytosol	78.77	95.8
Solyc03g044140.2.1	Tomato	cytosol, nucleus	78.52	95.5
EER97857	Sorghum	cytosol	78.27	95.48
PGSC0003DMT400064191	Potato	cytosol	78.02	94.89
Os07t0114400-01	Rice	plasma membrane	78.02	94.89
Solyc02g092640.2.1	Tomato	cytosol, nucleus	77.78	94.59
TraesCS2D01G260500.1	Wheat	cytosol	77.53	94.29
HORVU2Hr1G063420.1	Barley	cytosol	77.53	94.29
CDY30613	Canola	cytosol	77.04	93.69
CDY57359	Canola	cytosol	76.79	93.67
Zm00001d007951_P001	Maize	cytosol, nucleus	76.79	93.67
Bra029986.1-P	Field mustard	cytosol	75.8	93.31
CDX83104	Canola	cytosol	75.8	93.31
CDY57680	Canola	cytosol	76.54	93.09
CDY70654	Canola	cytosol	39.26	92.44
TraesCS2A01G263400.1	Wheat	cytosol, nucleus	77.78	92.11
AT2G23080.1	Thale cress	cytosol	74.81	90.99
Os03t0207300-01	Rice	cytosol	73.09	89.16
KRH04471	Soybean	nucleus	86.91	88.44
TraesCS4A01G049900.1	Wheat	cytosol	72.1	87.95
TraesCS4D01G254600.1	Wheat	cytosol	71.6	87.35
TraesCS4B01G254800.1	Wheat	cytosol	70.86	87.23
HORVU4Hr1G069390.1	Barley	cytosol	71.36	87.05
KRH58068	Soybean	mitochondrion	86.42	85.16
EER90840	Sorghum	plastid	80.0	84.16
Bra036044.1-P	Field mustard	plasma membrane	79.75	83.03
Zm00001d013217_P001	Maize	cytosol	78.02	82.51
TraesCS5A01G400100.1	Wheat	cytosol, mitochondrion	77.53	82.41
TraesCS5D01G410000.1	Wheat	plastid	77.53	82.41
Zm00001d034125_P002	Maize	mitochondrion, plastid	78.27	82.34
HORVU5Hr1G097230.1	Barley	cytosol, plastid	77.53	82.2
TraesCS5B01G404900.1	Wheat	cytosol, mitochondrion	77.28	82.15
AT3G50000.1	Thale cress	golgi, plasma membrane, vacuole	81.48	81.89
AT5G67380.1	Thale cress	golgi, plasma membrane	81.73	80.93
Bra036806.1-P	Field mustard	cytosol	66.42	79.82
CDX98044	Canola	cytosol	31.36	79.38
Zm00001d018669_P004	Maize	cytosol	73.58	79.26
TraesCS2B01G278700.2	Wheat	cytosol	72.59	77.78
Bra031829.1-P	Field mustard	cytosol	50.12	74.09
VIT_07s0129g00270.t01	Wine grape	mitochondrion	75.8	72.41
CDY67469	Canola	vacuole	48.15	66.55
CDY71648	Canola	plastid	26.17	65.84
CDY15289	Canola	vacuole	44.2	64.86
Os03t0762000-01	Rice	plastid	22.72	63.45
CDY29766	Canola	golgi, plasma membrane	55.31	63.28
CDY25489	Canola	golgi, plasma membrane	49.63	41.36
VIT_07s0005g02100.t01	Wine grape	cytosol	26.67	28.35
VIT_14s0060g00600.t01	Wine grape	cytosol	26.42	28.08
VIT_10s0003g01480.t01	Wine grape	cytosol	26.17	27.89
VIT_14s0066g01050.t01	Wine grape	cytosol	27.16	26.7
VIT_15s0045g00420.t01	Wine grape	cytosol	2.72	26.19
VIT_12s0028g01810.t01	Wine grape	cytosol	25.93	26.12
VIT_12s0035g01060.t01	Wine grape	cytosol	25.68	24.64
VIT_15s0048g02010.t01	Wine grape	cytosol, mitochondrion	28.15	24.36

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100259500	wikigene:100259500	MapMan:18.4.3.9.1	Gene3D:3.30.200.20	EMBL:AM454907
ProteinID:CAN72246	ProteinID:CAN72246.1	ProteinID:CCB57758	ProteinID:CCB57758.1	UniProt:F6HSU8	EMBL:FN596246
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488
GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100259500
wikigene:LOC100259500	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24054
PANTHER:PTHR24054:SF33	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
SignalP:SignalP-noTM	TIGR:TC53313	TMHMM:TMhelix	UniParc:UPI0001983A83	ArrayExpress:VIT_07s0129g00410	EnsemblPlantsGene:VIT_07s0129g00410
EnsemblPlants:VIT_07s0129g00410.t01	unigene:Vvi.3196	RefSeq:XP_002284196	RefSeq:XP_002284196.1	SEG:seg	:

Description

No Description!

Coordinates

chr7:+:15656513..15669687

Molecular Weight (calculated)

47059.9 Da

IEP (calculated)

8.763

GRAVY (calculated)

-0.368

Length

405 amino acids

Sequence
(BLAST)

001: MKDAHTPLVP LFPLLLVCAL VALRAPLALP PNLRPHSSPP IPDNKIITPI VDTSKARLKL QLSEISSSDV APMSKARVYA DVNVLRPKDY WDYESLTVQW
101: GDQDDYEVVR KVGRGKYSEV FEGINVNSNE RCIIKILKPV KKKKIKREIK ILQNLCGGPN VVKLLDIVRD QHSKTPSLIF EYVNSTDFKV LYPTLTDYDI
201: RYYIYELLKA LDYCHSQGIM HRDVKPHNVM IDHELRKLRL IDWGLAEFYH PGKEYNVRVA SRYFKGPELL VDLQDYDYSL DMWSLGCMFA GMIFRKEPFF
301: YGHDNHDQLV KIAKVLGTDE LNAYLNKYRL ELDPQLDALV GRHSRKPWSK FIHADNQHLV SPEAIDFLDK LLRYDHQDRL TAREAMAHPY FFQVRAAESS
401: RMRTQ

Best Arabidopsis Sequence Match ( AT5G67380.1 )
(BLAST)

001: MIDTLFFLFF LFFDSPLRRL LLLCAVLALR APTAHSPILR SSIVTPTARA VSEVSGCTTI DPDFLVEISD SNQTRAMSKA RVYTEVNVIR PKDYWDYESL
101: IVQWGEQDDY EVVRKVGRGK YSEVFEGINV NSKEKCIIKI LKPVKKKKIR REIKILQNLC GGPNIVKLLD VVRDQHSKTP SLIFEYVNST DFKVLYPTLT
201: DYDIRYYIYE LLKALDFCHS QGIMHRDVKP HNVMIDHELR KLRLIDWGLA EFYHPGKEYN VRVASRYFKG PELLVDLQDY DYSLDMWSLG CMFAGMIFRK
301: EPFFYGHDNQ DQLVKIAKVL GTDELNAYLN KYQLELDPQL EALVGRHSRK PWSKFINADN QHLVSPEAID FLDKLLRYDH QDRLTAKEAM AHAYFAQVRA
401: AETSRMRSQ

Arabidopsis Description

CKA1Casein kinase II subunit alpha-1 [Source:UniProtKB/Swiss-Prot;Acc:Q08467]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.