CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
endoplasmic reticulum 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71824
CDX77739
CDX80051
CDX80052
CDY28980
CDY40582
CDY41181
CDY41563
CDY64765

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G67380.1	CDX80051	AT2G46830.1	14978263
AT5G67380.1	CDX80052	AT2G46830.1	14978263
AT5G67380.1	CDY41563	AT2G46830.1	14978263
AT5G67380.1	CDX80051	AT2G46830.1	9724822
AT5G67380.1	CDX80052	AT2G46830.1	9724822
AT5G67380.1	CDY41563	AT2G46830.1	9724822
AT5G67380.1	CDX71824	AT3G60250.1	10535927
AT5G67380.1	CDY41181	AT3G60250.1	10535927
AT5G67380.1	CDY64765	AT3G60250.1	10535927
AT5G67380.1	CDX77739	AT5G47080.1	10535927
AT5G67380.1	CDY28980	AT5G47080.1	10535927
AT5G67380.1	CDY40582	AT5G47080.1	10535927

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70654	Canola	cytosol	63.98	59.88
CDY57359	Canola	cytosol	68.32	33.13
CDY57680	Canola	cytosol	68.32	33.03
CDY30613	Canola	cytosol	68.32	33.03
PGSC0003DMT400064191	Potato	cytosol	67.7	32.73
Solyc02g092640.2.1	Tomato	cytosol, nucleus	67.7	32.73
Solyc03g044140.2.1	Tomato	cytosol, nucleus	67.7	32.73
CDX83104	Canola	cytosol	65.84	32.22
TraesCS2D01G260500.1	Wheat	cytosol	66.46	32.13
GSMUA_Achr10P...	Banana	cytosol	66.46	32.13
GSMUA_Achr6P16850_001	Banana	cytosol	66.46	32.13
HORVU2Hr1G063420.1	Barley	cytosol	66.46	32.13
KRH77093	Soybean	nucleus	66.46	32.13
KRH28388	Soybean	cytosol	66.46	32.13
EER97857	Sorghum	cytosol	65.84	31.93
GSMUA_Achr5P01690_001	Banana	cytosol	65.22	31.53
Os07t0114400-01	Rice	plasma membrane	65.22	31.53
TraesCS2A01G263400.1	Wheat	cytosol, nucleus	66.46	31.29
Zm00001d007951_P001	Maize	cytosol, nucleus	63.35	30.72
TraesCS4B01G254800.1	Wheat	cytosol	60.87	29.79
TraesCS4D01G254600.1	Wheat	cytosol	60.87	29.52
HORVU4Hr1G069390.1	Barley	cytosol	60.87	29.52
Os03t0207300-01	Rice	cytosol	60.87	29.52
TraesCS4A01G049900.1	Wheat	cytosol	60.87	29.52
Bra036806.1-P	Field mustard	cytosol	59.01	28.19
TraesCS5B01G404900.1	Wheat	cytosol, mitochondrion	66.46	28.08
TraesCS5A01G400100.1	Wheat	cytosol, mitochondrion	66.46	28.08
TraesCS5D01G410000.1	Wheat	plastid	66.46	28.08
TraesCS2B01G278700.2	Wheat	cytosol	65.84	28.04
HORVU5Hr1G097230.1	Barley	cytosol, plastid	66.46	28.01
AT5G67380.1	Thale cress	golgi, plasma membrane	69.57	27.38
CDX76880	Canola	cytosol, mitochondrion	59.01	27.38
KRH04471	Soybean	nucleus	67.08	27.14
EER90840	Sorghum	plastid	64.6	27.01
Zm00001d034125_P002	Maize	mitochondrion, plastid	63.98	26.75
VIT_07s0129g00410.t01	Wine grape	golgi, plasma membrane	65.84	26.17
Zm00001d013217_P001	Maize	cytosol	62.11	26.11
Bra031829.1-P	Field mustard	cytosol	44.1	25.91
KRH58068	Soybean	mitochondrion	65.84	25.79
Zm00001d018669_P004	Maize	cytosol	59.01	25.27
CDY38928	Canola	plastid	58.39	23.44
CDY49445	Canola	plastid	59.01	22.57
CDX89544	Canola	plastid	58.39	22.54
CDY52692	Canola	cytosol, mitochondrion, nucleus	14.91	21.24
CDY10766	Canola	extracellular, plasma membrane, vacuole	24.84	17.86
CDY15289	Canola	vacuole	30.43	17.75
CDY67469	Canola	vacuole	31.68	17.41
CDY29766	Canola	golgi, plasma membrane	35.4	16.1
CDY69647	Canola	cytosol	27.33	12.94
CDY64921	Canola	cytosol	27.33	11.76
CDY66894	Canola	cytosol	27.33	11.76
CDY70859	Canola	cytosol	27.33	11.76
CDX78886	Canola	cytosol	27.33	11.76
CDY34051	Canola	cytosol	27.33	11.58
CDX99437	Canola	cytosol	27.33	11.55
CDX97773	Canola	cytosol	27.33	10.73
CDX70574	Canola	cytosol	25.47	10.02
CDX78587	Canola	cytosol	25.47	10.0
CDX80585	Canola	cytosol	24.84	9.95
CDX88238	Canola	cytosol	24.84	9.93
CDY18828	Canola	cytosol	24.84	9.9
CDY19757	Canola	cytosol	24.84	9.85
CDX87033	Canola	cytosol	24.84	9.85
CDX74129	Canola	cytosol	24.84	9.73
CDY49981	Canola	cytosol	24.84	9.73
CDY05202	Canola	cytosol	24.22	9.51
CDY45686	Canola	mitochondrion	25.47	9.49
CDX67856	Canola	mitochondrion	25.47	9.49
CDX91895	Canola	mitochondrion	27.33	9.44
CDX74346	Canola	cytosol, mitochondrion	26.71	9.19
CDY07202	Canola	mitochondrion	26.71	9.13
CDX93471	Canola	cytosol	23.6	9.11
CDX94939	Canola	cytosol	23.6	9.11
CDY31060	Canola	plastid	23.6	9.03
CDY65729	Canola	plastid	23.6	9.03
CDY51144	Canola	mitochondrion	26.71	9.0
CDY65303	Canola	mitochondrion	24.22	8.92
CDY52332	Canola	mitochondrion	24.22	8.92
CDX98044	Canola	cytosol	8.07	8.12
CDY27737	Canola	cytosol	24.22	7.59
CDY72370	Canola	cytosol	4.97	7.55
CDY25489	Canola	golgi, plasma membrane	21.74	7.2
CDX77348	Canola	plastid	6.83	6.29
CDX78658	Canola	cytosol, nucleus, peroxisome	20.5	5.81
CDY62551	Canola	cytosol	7.45	4.55
Os03t0762000-01	Rice	plastid	3.11	3.45

Protein Annotations

EnsemblPlants:CDY71648	EnsemblPlantsGene:GSBRNA2T00017788001	Gene3D:1.10.510.10	InterPro:Kinase-like_dom_sf	PANTHER:PTHR24054	PANTHER:PTHR24054:SF35
ProteinID:CDY71648	ProteinID:CDY71648.1	SEG:seg	SUPFAM:SSF56112	UniParc:UPI0004EE5FC5	UniProt:A0A078JVN8
MapMan:50.2.7	:	:	:	:	:

Description

BnaAnng38300DBnaAnng38300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JVN8]

Coordinates

chrLK046774:+:1102..2463

Molecular Weight (calculated)

18518.4 Da

IEP (calculated)

8.226

GRAVY (calculated)

-0.153

Length

161 amino acids

Sequence
(BLAST)

001: MCHSSSPRIS SSTLTIFTTL GRSTMCVWHQ DTLRDLNFLW TCKTMTIRWI CGALVVCLLQ NIFRKEPFFY GHDNQNQLVK IAKVLGTDEL NAYLDKYQLE
101: LEPQLEALVG RHSRKPWSKF INADNQHLVS PEAIDFLDKL LRLTAKEAMA HDYFAQVRAA G

Best Arabidopsis Sequence Match ( AT2G23070.1 )
(BLAST)

001: MALRPCTGFT ISSLRNASAA NNNLFSLLSF SSSSPAKRNL LLSSLQDNLR RFASSASLYR QHLRNQQQQH QQQQQSRVKE KSETLAQKIG KSIRRAGAPS
101: KARVYADVNV VRPKDYWDYE SLAVQWGVQD DYEVVRKVGR GKYSEVFEGI HATDNEKCVI KILKPVKKKK IKREIKILQN LCGGPNIVKL LDIVRDQQSK
201: TPSLIFEHVN NKDFKVLYPT LSDYDVRYYI FELLKALDFC HSRGIMHRDV KPHNVMIDHE QRKLRLIDWG LAEFYHPGKE YNVRVASRYF KGPELLVDLQ
301: DYDYSLDLWS LGCMFAGMIF RKEPFFYGHD NYDQLVKIAK VLGTDELNAY LNKYRIELDP NLTSLVGRHS RKPWTKFINS ENQHLAVPEA VDFVDKLLRY
401: DHQERPTAKE AMAHPYFYPI RNAESSRTPR SQ

Arabidopsis Description

CKA4Casein kinase II subunit alpha-4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64816]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.