CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71154
CDX75751
CDX76880
CDX79708
CDX89544
CDY02832
CDY18468
CDY32688
CDY33246
CDY38928
CDY39099
CDY39101
CDY49445
CDY52962
CDY56127
CDY61025
CDY66142

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G23070.1	CDY52962	AT1G64860.1	22111690
AT2G23070.1	CDY56127	AT1G64860.1	22111690
AT2G23070.1	CDX76880	AT2G23070.1	22111690
AT2G23070.1	CDX89544	AT2G23070.1	22111690
AT2G23070.1	CDY38928	AT2G23070.1	22111690
AT2G23070.1	CDY49445	AT2G23070.1	22111690
AT2G23070.1	CDX79708	AT2G36990.1	22111690
AT2G23070.1	CDY18468	AT2G36990.1	22111690
AT2G23070.1	CDY66142	AT2G36990.1	22111690
AT2G23070.1	CDX75751	AT3G14180.1	21798944
AT2G23070.1	CDY33246	AT3G14180.1	21798944
AT2G23070.1	CDY39099	AT3G14180.1	21798944
AT2G23070.1	CDY39101	AT3G14180.1	21798944
AT2G23070.1	CDX71154	AT5G58720.1	21798944
AT2G23070.1	CDY02832	AT5G58720.1	21798944
AT2G23070.1	CDY32688	AT5G58720.1	21798944
AT2G23070.1	CDY61025	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032182.1-P	Field mustard	plastid	100.0	100.0
CDX76880	Canola	cytosol, mitochondrion	82.29	95.1
CDX89544	Canola	plastid	98.75	94.96
CDY49445	Canola	plastid	93.27	88.84
KRH04448	Soybean	nucleus	76.56	88.47
AT2G23070.1	Thale cress	plastid	92.52	85.88
CDX83104	Canola	cytosol	68.58	83.59
CDY57359	Canola	cytosol	69.08	83.43
CDY30613	Canola	cytosol	69.08	83.18
CDY57680	Canola	cytosol	68.83	82.88
CDY70654	Canola	cytosol	33.92	79.07
KRH58076	Soybean	endoplasmic reticulum	76.31	78.06
Solyc02g064700.2.1	Tomato	plastid	82.79	77.75
CDX98044	Canola	cytosol	30.67	76.88
VIT_07s0129g00270.t01	Wine grape	mitochondrion	80.55	76.18
HORVU4Hr1G030100.1	Barley	cytosol	17.46	76.09
GSMUA_Achr6P34710_001	Banana	golgi, plasma membrane, vacuole	74.81	74.44
GSMUA_Achr9P09590_001	Banana	mitochondrion, plastid	74.56	68.42
KXG37490	Sorghum	mitochondrion	67.08	65.45
Os03t0763000-01	Rice	plastid	66.08	64.95
Zm00001d034137_P001	Maize	plastid	62.34	63.78
TraesCS5A01G400900.1	Wheat	mitochondrion, plastid	64.09	62.38
TraesCS5B01G405700.1	Wheat	mitochondrion, plastid	64.09	62.23
CDY67469	Canola	vacuole	45.39	62.12
TraesCS5D01G411100.1	Wheat	mitochondrion	63.59	61.74
CDY15289	Canola	vacuole	41.9	60.87
HORVU5Hr1G097400.2	Barley	cytosol, mitochondrion, nucleus, plastid	63.59	59.58
CDY29766	Canola	golgi, plasma membrane	52.12	59.04
Zm00001d032025_P001	Maize	mitochondrion	28.93	58.59
CDY71648	Canola	plastid	23.44	58.39
KRH58078	Soybean	cytosol	2.49	52.63
CDY25489	Canola	golgi, plasma membrane	44.39	36.63
CDY10766	Canola	extracellular, plasma membrane, vacuole	15.96	28.57
CDY69647	Canola	cytosol	22.44	26.47
CDY66894	Canola	cytosol	24.19	25.94
CDX70574	Canola	cytosol	25.94	25.43
CDX78587	Canola	cytosol	25.94	25.37
CDY34051	Canola	cytosol	23.94	25.26
CDX78886	Canola	cytosol	23.44	25.13
CDY64921	Canola	cytosol	23.44	25.13
CDY70859	Canola	cytosol	23.44	25.13
CDX97773	Canola	cytosol	25.44	24.88
CDX99437	Canola	cytosol	23.44	24.67
CDX80585	Canola	cytosol	24.69	24.63
CDX88238	Canola	cytosol	24.69	24.57
CDY19757	Canola	cytosol	24.69	24.38
CDX87033	Canola	cytosol	24.69	24.38
CDY05202	Canola	cytosol	24.69	24.15
CDY18828	Canola	cytosol	24.19	24.01
CDX74129	Canola	cytosol	24.44	23.84
CDY49981	Canola	cytosol	24.44	23.84
CDY72370	Canola	cytosol	6.23	23.58
CDX93471	Canola	cytosol	23.94	23.02
CDX94939	Canola	cytosol	23.94	23.02
CDY65729	Canola	plastid	23.94	22.8
CDY31060	Canola	plastid	23.94	22.8
CDX91895	Canola	mitochondrion	25.19	21.67
CDY07202	Canola	mitochondrion	25.44	21.66
CDX74346	Canola	cytosol, mitochondrion	25.19	21.58
CDY51144	Canola	mitochondrion	25.44	21.34
CDY65303	Canola	mitochondrion	22.69	20.82
CDY45686	Canola	mitochondrion	22.19	20.6
CDX67856	Canola	mitochondrion	22.19	20.6
CDY52332	Canola	mitochondrion	22.44	20.59
CDY52692	Canola	cytosol, mitochondrion, nucleus	5.74	20.35
CDY62551	Canola	cytosol	12.97	19.7
CDY27737	Canola	cytosol	24.69	19.26
CDX77348	Canola	plastid	7.98	18.29
CDX78658	Canola	cytosol, nucleus, peroxisome	23.19	16.37

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.3.9.1	Gene3D:3.30.200.20	GO:A0A078HQ81	UniProt:A0A078HQ81	EnsemblPlants:CDY38928
ProteinID:CDY38928	ProteinID:CDY38928.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00066969001
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR24054	PANTHER:PTHR24054:SF33	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	UniParc:UPI00025445C8	SEG:seg	:	:	:

Description

BnaA04g13490DBnaA04g13490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQ81]

Coordinates

chrLK032435:-:81115..84062

Molecular Weight (calculated)

46525.1 Da

IEP (calculated)

9.876

GRAVY (calculated)

-0.466

Length

401 amino acids

Sequence
(BLAST)

001: MAFRPIGFTI SSLRNASAAN DLRFSFLSIS SPSPAKKKSL LSFLRGFASL YRQQPRVNKS ETLAQKIGKS IRRAGAPSKA RVYADVNVIK PKDYWDYESL
101: AVQWGSQDDY EVVRKVGRGK YSEVFEGIHA TDNEKCVIKI LKPVKKKKIK REIKILQNLC GGPNIVKLLD IVRDQQSKTP SLIFEHVNNK DFKVLYPTLS
201: DYDVRYYIYE LLKALDFCHS RGIMHRDVKP HNVMIDHEQR KLRLIDWGLA EFYHPGKEYN VRVASRYFKG PELLVDLMDY DYSLDLWSLG CMFAGMIFRK
301: EPFFYGHDNY DQLVKIAKVL GTDELNTYLN RYRIELDPNL ASLVGRHSRK PWSKFINSEN QHLAVPEAVD FVDKLLKYDH QERPTAKEAM AHPYFNPIRN
401: A

Best Arabidopsis Sequence Match ( AT2G23070.1 )
(BLAST)

001: MALRPCTGFT ISSLRNASAA NNNLFSLLSF SSSSPAKRNL LLSSLQDNLR RFASSASLYR QHLRNQQQQH QQQQQSRVKE KSETLAQKIG KSIRRAGAPS
101: KARVYADVNV VRPKDYWDYE SLAVQWGVQD DYEVVRKVGR GKYSEVFEGI HATDNEKCVI KILKPVKKKK IKREIKILQN LCGGPNIVKL LDIVRDQQSK
201: TPSLIFEHVN NKDFKVLYPT LSDYDVRYYI FELLKALDFC HSRGIMHRDV KPHNVMIDHE QRKLRLIDWG LAEFYHPGKE YNVRVASRYF KGPELLVDLQ
301: DYDYSLDLWS LGCMFAGMIF RKEPFFYGHD NYDQLVKIAK VLGTDELNAY LNKYRIELDP NLTSLVGRHS RKPWTKFINS ENQHLAVPEA VDFVDKLLRY
401: DHQERPTAKE AMAHPYFYPI RNAESSRTPR SQ

Arabidopsis Description

CKA4Casein kinase II subunit alpha-4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64816]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.