Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
endoplasmic reticulum: 28499913 nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH58078 | Soybean | cytosol | 5.48 | 100.0 |
| CDX76880 | Canola | cytosol, mitochondrion | 90.78 | 90.78 |
| KRH28388 | Soybean | cytosol | 82.13 | 85.59 |
| KRH77093 | Soybean | nucleus | 81.84 | 85.29 |
| KRH58076 | Soybean | endoplasmic reticulum | 92.22 | 81.63 |
| HORVU4Hr1G030100.1 | Barley | cytosol | 20.75 | 78.26 |
| Bra032182.1-P | Field mustard | plastid | 88.47 | 76.56 |
| CDY38928 | Canola | plastid | 88.47 | 76.56 |
| GSMUA_Achr6P34710_001 | Banana | golgi, plasma membrane, vacuole | 88.76 | 76.43 |
| Bra039942.1-P | Field mustard | plastid | 91.35 | 75.48 |
| Solyc02g064700.2.1 | Tomato | plastid | 92.8 | 75.41 |
| CDY49445 | Canola | plastid | 91.35 | 75.3 |
| VIT_07s0129g00270.t01 | Wine grape | mitochondrion | 91.93 | 75.24 |
| CDX89544 | Canola | plastid | 90.2 | 75.06 |
| AT2G23070.1 | Thale cress | plastid | 91.07 | 73.15 |
| KRH04471 | Soybean | nucleus | 83.0 | 72.36 |
| KRH58068 | Soybean | mitochondrion | 82.42 | 69.59 |
| GSMUA_Achr9P09590_001 | Banana | mitochondrion, plastid | 84.73 | 67.28 |
| KXG37490 | Sorghum | mitochondrion | 78.39 | 66.18 |
| Os03t0763000-01 | Rice | plastid | 76.37 | 64.95 |
| Zm00001d034137_P001 | Maize | plastid | 72.91 | 64.54 |
| TraesCS5A01G400900.1 | Wheat | mitochondrion, plastid | 74.93 | 63.11 |
| TraesCS5B01G405700.1 | Wheat | mitochondrion, plastid | 74.93 | 62.95 |
| TraesCS5D01G411100.1 | Wheat | mitochondrion | 74.35 | 62.47 |
| HORVU5Hr1G097400.2 | Barley | cytosol, mitochondrion, nucleus, plastid | 74.64 | 60.51 |
| Zm00001d032025_P001 | Maize | mitochondrion | 33.43 | 58.59 |
| KRH62838 | Soybean | cytosol, mitochondrion | 7.78 | 32.93 |
| KRH31752 | Soybean | cytosol | 30.55 | 25.92 |
| KRG96686 | Soybean | cytosol | 30.26 | 25.86 |
| KRH33767 | Soybean | cytosol | 30.55 | 25.85 |
| KRH68409 | Soybean | cytosol | 29.97 | 25.62 |
| KRH61707 | Soybean | cytosol | 27.95 | 25.53 |
| KRH52380 | Soybean | cytosol | 27.95 | 25.53 |
| KRH11042 | Soybean | cytosol | 27.67 | 25.26 |
| KRH21245 | Soybean | cytosol | 27.09 | 25.13 |
| KRH22265 | Soybean | cytosol | 29.97 | 24.94 |
| KRH27067 | Soybean | cytosol | 29.39 | 24.94 |
| KRG90477 | Soybean | cytosol | 30.55 | 24.88 |
| KRH26299 | Soybean | cytosol | 29.11 | 24.05 |
| KRH06055 | Soybean | cytosol | 29.11 | 24.05 |
| KRH25797 | Soybean | cytosol | 29.11 | 24.05 |
| KRH42881 | Soybean | cytosol | 26.22 | 23.76 |
| KRH58985 | Soybean | cytosol | 26.22 | 23.76 |
| KRH69166 | Soybean | cytosol | 30.84 | 23.73 |
| KRH55721 | Soybean | cytosol | 28.24 | 23.39 |
| KRH48234 | Soybean | cytosol, mitochondrion | 30.84 | 22.77 |
| KRH65140 | Soybean | mitochondrion | 29.97 | 22.13 |
| KRH75231 | Soybean | cytosol | 6.34 | 22.0 |
| KRH21176 | Soybean | cytosol | 16.14 | 21.54 |
| KRH40543 | Soybean | mitochondrion | 28.24 | 21.3 |
| KRH00638 | Soybean | mitochondrion | 27.95 | 20.77 |
| KRH70115 | Soybean | cytosol | 17.0 | 17.0 |
| KRH12527 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 10.09 | 15.42 |
| KRH32741 | Soybean | mitochondrion | 8.36 | 12.78 |
Protein Annotations
| Gene3D:1.10.510.10 | EntrezGene:100817795 | MapMan:18.4.3.9.1 | Gene3D:3.30.200.20 | EMBL:ACUP02010415 | EnsemblPlantsGene:GLYMA_17G161800 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004672 | GO:GO:0004674 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0006464 | GO:GO:0006468 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016301 | GO:GO:0016740 | GO:GO:0019538 | UniProt:I1MVM6 | InterPro:IPR000719 | ProteinID:KRH04447.1 |
| EnsemblPlants:KRH04448 | ProteinID:KRH04448 | ProteinID:KRH04448.1 | InterPro:Kinase-like_dom_sf | PFAM:PF00069 | ScanProsite:PS00107 |
| ScanProsite:PS00108 | PFscan:PS50011 | PANTHER:PTHR24054 | PANTHER:PTHR24054:SF33 | InterPro:Prot_kinase_dom | InterPro:Protein_kinase_ATP_BS |
| SMART:SM00220 | SUPFAM:SSF56112 | InterPro:Ser/Thr_kinase_AS | UniParc:UPI000233EDBD | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr17:-:14135127..14144033
Molecular Weight (calculated)
40620.8 Da
IEP (calculated)
8.917
GRAVY (calculated)
-0.537
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQKIGKSTR RPGASSKARV YADVNVVRPK EYWDYESLNV QWGEQDDYEV VRKVGRGKYS EVFEGVHCTD GEKCVIKILK PVKKKKIKRE IKILQNLCGG
101: PNVVKLLDIV RDQQSKTPSL IFEYVNNTDF KVLYPTLSDY DIRYYIFELL KALDYCHSQG IMHRDVKPHN VMIDHEQRKL RLIDWGLAEF YHPGKEYNVR
201: VASRYFKGPE LLVDLQDYDY SLDLWSLGCM FAGMIFRKEP FFYGHDNYDQ LVKIAKVLGT DELSVYLDKY RIELDPHLAA LIGRHSRKPW AKFINVENHH
301: LAVPEAVDFV DKLLRYDHQE RPTAKEAMAH PYFNPVRNAE SSRTRAH
101: PNVVKLLDIV RDQQSKTPSL IFEYVNNTDF KVLYPTLSDY DIRYYIFELL KALDYCHSQG IMHRDVKPHN VMIDHEQRKL RLIDWGLAEF YHPGKEYNVR
201: VASRYFKGPE LLVDLQDYDY SLDLWSLGCM FAGMIFRKEP FFYGHDNYDQ LVKIAKVLGT DELSVYLDKY RIELDPHLAA LIGRHSRKPW AKFINVENHH
301: LAVPEAVDFV DKLLRYDHQE RPTAKEAMAH PYFNPVRNAE SSRTRAH
001: MALRPCTGFT ISSLRNASAA NNNLFSLLSF SSSSPAKRNL LLSSLQDNLR RFASSASLYR QHLRNQQQQH QQQQQSRVKE KSETLAQKIG KSIRRAGAPS
101: KARVYADVNV VRPKDYWDYE SLAVQWGVQD DYEVVRKVGR GKYSEVFEGI HATDNEKCVI KILKPVKKKK IKREIKILQN LCGGPNIVKL LDIVRDQQSK
201: TPSLIFEHVN NKDFKVLYPT LSDYDVRYYI FELLKALDFC HSRGIMHRDV KPHNVMIDHE QRKLRLIDWG LAEFYHPGKE YNVRVASRYF KGPELLVDLQ
301: DYDYSLDLWS LGCMFAGMIF RKEPFFYGHD NYDQLVKIAK VLGTDELNAY LNKYRIELDP NLTSLVGRHS RKPWTKFINS ENQHLAVPEA VDFVDKLLRY
401: DHQERPTAKE AMAHPYFYPI RNAESSRTPR SQ
101: KARVYADVNV VRPKDYWDYE SLAVQWGVQD DYEVVRKVGR GKYSEVFEGI HATDNEKCVI KILKPVKKKK IKREIKILQN LCGGPNIVKL LDIVRDQQSK
201: TPSLIFEHVN NKDFKVLYPT LSDYDVRYYI FELLKALDFC HSRGIMHRDV KPHNVMIDHE QRKLRLIDWG LAEFYHPGKE YNVRVASRYF KGPELLVDLQ
301: DYDYSLDLWS LGCMFAGMIF RKEPFFYGHD NYDQLVKIAK VLGTDELNAY LNKYRIELDP NLTSLVGRHS RKPWTKFINS ENQHLAVPEA VDFVDKLLRY
401: DHQERPTAKE AMAHPYFYPI RNAESSRTPR SQ
Arabidopsis Description
CKA4Casein kinase II subunit alpha-4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64816]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.