Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 2
- mitochondrion 4
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 mitochondrion: 28499913 nucleus: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH04448 | Soybean | nucleus | 81.63 | 92.22 |
| CDX76880 | Canola | cytosol, mitochondrion | 76.02 | 85.88 |
| KRH28388 | Soybean | cytosol | 69.13 | 81.38 |
| KRH77093 | Soybean | nucleus | 68.88 | 81.08 |
| Bra032182.1-P | Field mustard | plastid | 78.06 | 76.31 |
| CDY38928 | Canola | plastid | 78.06 | 76.31 |
| HORVU4Hr1G030100.1 | Barley | cytosol | 17.86 | 76.09 |
| VIT_07s0129g00270.t01 | Wine grape | mitochondrion | 81.63 | 75.47 |
| Solyc02g064700.2.1 | Tomato | plastid | 82.14 | 75.41 |
| Bra039942.1-P | Field mustard | plastid | 80.1 | 74.76 |
| CDY49445 | Canola | plastid | 79.85 | 74.35 |
| GSMUA_Achr6P34710_001 | Banana | golgi, plasma membrane, vacuole | 75.77 | 73.7 |
| CDX89544 | Canola | plastid | 78.06 | 73.38 |
| AT2G23070.1 | Thale cress | plastid | 79.85 | 72.45 |
| KRH04471 | Soybean | nucleus | 71.68 | 70.6 |
| KRH58068 | Soybean | mitochondrion | 71.43 | 68.13 |
| GSMUA_Achr9P09590_001 | Banana | mitochondrion, plastid | 74.23 | 66.59 |
| KXG37490 | Sorghum | mitochondrion | 67.35 | 64.23 |
| Os03t0763000-01 | Rice | plastid | 66.84 | 64.22 |
| Zm00001d034137_P001 | Maize | plastid | 63.01 | 63.01 |
| TraesCS5B01G405700.1 | Wheat | mitochondrion, plastid | 64.54 | 61.26 |
| TraesCS5A01G400900.1 | Wheat | mitochondrion, plastid | 64.29 | 61.16 |
| TraesCS5D01G411100.1 | Wheat | mitochondrion | 64.03 | 60.77 |
| HORVU5Hr1G097400.2 | Barley | cytosol, mitochondrion, nucleus, plastid | 65.05 | 59.58 |
| Zm00001d032025_P001 | Maize | mitochondrion | 29.34 | 58.08 |
| KRH62838 | Soybean | cytosol, mitochondrion | 6.89 | 32.93 |
| KRH31752 | Soybean | cytosol | 26.53 | 25.43 |
| KRG96686 | Soybean | cytosol | 26.28 | 25.37 |
| KRH27067 | Soybean | cytosol | 26.28 | 25.18 |
| KRH22265 | Soybean | cytosol | 26.79 | 25.18 |
| KRH68409 | Soybean | cytosol | 26.02 | 25.12 |
| KRH33767 | Soybean | cytosol | 26.28 | 25.12 |
| KRG90477 | Soybean | cytosol | 26.28 | 24.18 |
| KRH52380 | Soybean | cytosol | 23.21 | 23.95 |
| KRH61707 | Soybean | cytosol | 23.21 | 23.95 |
| KRH11042 | Soybean | cytosol | 22.96 | 23.68 |
| KRH25797 | Soybean | cytosol | 25.26 | 23.57 |
| KRH26299 | Soybean | cytosol | 25.26 | 23.57 |
| KRH06055 | Soybean | cytosol | 25.26 | 23.57 |
| KRH21245 | Soybean | cytosol | 22.45 | 23.53 |
| KRH69166 | Soybean | cytosol | 26.53 | 23.06 |
| KRH75231 | Soybean | cytosol | 5.87 | 23.0 |
| KRH55721 | Soybean | cytosol | 24.49 | 22.91 |
| KRH42881 | Soybean | cytosol | 21.68 | 22.19 |
| KRH58985 | Soybean | cytosol | 21.68 | 22.19 |
| KRH48234 | Soybean | cytosol, mitochondrion | 26.02 | 21.7 |
| KRH65140 | Soybean | mitochondrion | 25.51 | 21.28 |
| KRH40543 | Soybean | mitochondrion | 23.98 | 20.43 |
| KRH00638 | Soybean | mitochondrion | 23.72 | 19.91 |
| KRH21176 | Soybean | cytosol | 13.01 | 19.62 |
| KRH70115 | Soybean | cytosol | 14.29 | 16.14 |
| KRH12527 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 8.42 | 14.54 |
| KRH32741 | Soybean | mitochondrion | 7.65 | 13.22 |
| KRH58078 | Soybean | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.510.10 | MapMan:18.4.3.9.1 | Gene3D:3.30.200.20 | UniProt:A0A0R0JTD4 | EMBL:ACUP02003196 | EnsemblPlantsGene:GLYMA_05G1046002 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004672 | GO:GO:0004674 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0006464 | GO:GO:0006468 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016301 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR000719 | EnsemblPlants:KRH58076 | ProteinID:KRH58076 |
| ProteinID:KRH58076.1 | InterPro:Kinase-like_dom_sf | PFAM:PF00069 | ScanProsite:PS00107 | ScanProsite:PS00108 | PFscan:PS50011 |
| PANTHER:PTHR24054 | PANTHER:PTHR24054:SF33 | InterPro:Prot_kinase_dom | InterPro:Protein_kinase_ATP_BS | SMART:SM00220 | SUPFAM:SSF56112 |
| InterPro:Ser/Thr_kinase_AS | UniParc:UPI0006ED9F03 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr5:+:27799630..27805602
Molecular Weight (calculated)
45564.9 Da
IEP (calculated)
9.202
GRAVY (calculated)
-0.454
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MALRPFHFNS FSRDRLLFLL CSSLSHSSFP SPLRSPNFPQ TFSLRRFAAA PLARPPPPPP PLDAMAQKIG KSTRRPGSSS KARVYADVNV VRPKEYWDYE
101: SLNVQWGEQD DYEVVRKVGR GKYSEVFEGV HCTDGEKCVI KILKPVKKKK IKREIKILQN LCGGPNIVQL LDIVRDQQSK TPSLIFEYVN NTDFKVLYPT
201: LSDYEIRYYI YELLKALDYC HSQGIMHRDV KPHNVMIDHE QRKLRLIDWG LAEFYHPGKE YNVRVASRYF KGPELLVDLQ DYDYSLDLWS LGCMFAGMIF
301: RKEPFFYGHD NYDQLVKIAK VLGTDGLSAY LDKYRIELDP HLAALIGRHS RKPWAKFINV ENHHMAVPEA VDFVDKLLRY DHQERPTAKE AM
101: SLNVQWGEQD DYEVVRKVGR GKYSEVFEGV HCTDGEKCVI KILKPVKKKK IKREIKILQN LCGGPNIVQL LDIVRDQQSK TPSLIFEYVN NTDFKVLYPT
201: LSDYEIRYYI YELLKALDYC HSQGIMHRDV KPHNVMIDHE QRKLRLIDWG LAEFYHPGKE YNVRVASRYF KGPELLVDLQ DYDYSLDLWS LGCMFAGMIF
301: RKEPFFYGHD NYDQLVKIAK VLGTDGLSAY LDKYRIELDP HLAALIGRHS RKPWAKFINV ENHHMAVPEA VDFVDKLLRY DHQERPTAKE AM
001: MALRPCTGFT ISSLRNASAA NNNLFSLLSF SSSSPAKRNL LLSSLQDNLR RFASSASLYR QHLRNQQQQH QQQQQSRVKE KSETLAQKIG KSIRRAGAPS
101: KARVYADVNV VRPKDYWDYE SLAVQWGVQD DYEVVRKVGR GKYSEVFEGI HATDNEKCVI KILKPVKKKK IKREIKILQN LCGGPNIVKL LDIVRDQQSK
201: TPSLIFEHVN NKDFKVLYPT LSDYDVRYYI FELLKALDFC HSRGIMHRDV KPHNVMIDHE QRKLRLIDWG LAEFYHPGKE YNVRVASRYF KGPELLVDLQ
301: DYDYSLDLWS LGCMFAGMIF RKEPFFYGHD NYDQLVKIAK VLGTDELNAY LNKYRIELDP NLTSLVGRHS RKPWTKFINS ENQHLAVPEA VDFVDKLLRY
401: DHQERPTAKE AMAHPYFYPI RNAESSRTPR SQ
101: KARVYADVNV VRPKDYWDYE SLAVQWGVQD DYEVVRKVGR GKYSEVFEGI HATDNEKCVI KILKPVKKKK IKREIKILQN LCGGPNIVKL LDIVRDQQSK
201: TPSLIFEHVN NKDFKVLYPT LSDYDVRYYI FELLKALDFC HSRGIMHRDV KPHNVMIDHE QRKLRLIDWG LAEFYHPGKE YNVRVASRYF KGPELLVDLQ
301: DYDYSLDLWS LGCMFAGMIF RKEPFFYGHD NYDQLVKIAK VLGTDELNAY LNKYRIELDP NLTSLVGRHS RKPWTKFINS ENQHLAVPEA VDFVDKLLRY
401: DHQERPTAKE AMAHPYFYPI RNAESSRTPR SQ
Arabidopsis Description
CKA4Casein kinase II subunit alpha-4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64816]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.