CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98291
KRH08190
KRH28715
KRH30312
KRH69884
KRH76747

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36990.1	KRH08190	AT3G50910.1	21798944
AT2G36990.1	KRH28715	AT3G50910.1	21798944
AT2G36990.1	KRH69884	AT3G50910.1	21798944
AT2G36990.1	KRH76747	AT3G50910.1	21798944
AT2G36990.1	KRG98291	AT5G58720.1	21798944
AT2G36990.1	KRH30312	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96007	Soybean	nucleus	93.86	93.86
KRH32532	Soybean	nucleus, plastid	65.88	63.48
KRH19920	Soybean	plastid	64.8	62.54
CDY66142	Canola	nucleus	37.18	60.95
GSMUA_Achr4P30300_001	Banana	nucleus	21.84	60.2
VIT_08s0040g01560.t01	Wine grape	plastid	58.3	57.58
CDX79708	Canola	endoplasmic reticulum, extracellular	14.44	53.69
Bra017213.1-P	Field mustard	plastid	50.54	52.53
AT2G36990.1	Thale cress	plastid	51.08	51.74
CDY18468	Canola	plastid	50.36	51.29
Solyc09g008040.2.1	Tomato	nucleus, plastid	49.64	48.85
PGSC0003DMT400055506	Potato	nucleus, plastid	49.64	47.25
GSMUA_Achr11P...	Banana	nucleus	44.95	43.01
HORVU5Hr1G125110.10	Barley	plastid	37.18	37.25
TraesCS5D01G551200.1	Wheat	plastid	37.55	37.21
TraesCS5B01G563800.2	Wheat	plastid	37.55	36.94
TraesCS4A01G315700.3	Wheat	plastid	37.55	36.75
Os08t0242800-01	Rice	plastid	37.73	36.54
KXG37075	Sorghum	plastid	36.28	36.22
Zm00001d012810_P003	Maize	plastid	25.09	32.48
KRH51354	Soybean	nucleus	27.08	30.0
KRH60664	Soybean	nucleus	27.98	27.48
KRH39837	Soybean	plastid	21.84	24.06
KRH23963	Soybean	plastid	21.84	24.06
KRH53442	Soybean	plastid	20.4	22.29
KRH64502	Soybean	plastid	20.58	21.97
KRH04862	Soybean	mitochondrion	20.94	21.05
KRH18145	Soybean	mitochondrion, nucleus	19.13	20.7
KRH16520	Soybean	mitochondrion, nucleus	18.77	20.31
KRH16276	Soybean	golgi, mitochondrion, nucleus, plastid	12.09	16.22

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	EntrezGene:100815699	MapMan:15.6.2.1	EMBL:ACUP02002071	EnsemblPlantsGene:GLYMA_03G182600
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016987	GO:GO:2000142	UniProt:I1JPP1	InterPro:IPR036388	EnsemblPlants:KRH67719
ProteinID:KRH67719	ProteinID:KRH67719.1	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046
ScanProsite:PS00716	PANTHER:PTHR30603	PANTHER:PTHR30603:SF9	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2
InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946
TIGRFAMs:TIGR02937	UniParc:UPI00023C1151	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:39449951..39455223

Molecular Weight (calculated)

62782.4 Da

IEP (calculated)

9.584

GRAVY (calculated)

-0.469

Length

554 amino acids

Sequence
(BLAST)

001: MFSSSPPFPS SSSPSVTMLH EQAAPAVASW SSSSAAQHFP TSVLLQEQRD EYKPLLHVHN KETTLNTRQM DMTSVHEKGN MSNGDQLVHD FVQQLHLRSH
101: LQNLLTCSPT RGIAASSILQ PVDIDSEWPA DGLPGNAISL AQQALSASKQ AVSTTGEMKL IEIDDDDPLP FGLASTSLAN SSLKKNKVVR STRIIERRSK
201: QRKSSKSKII DEESYLERKS DVQRRLRLEK KLKEGYDQND PLRLFLSGPE SRQLLTREEE SLLITQLQDL SRFEEVKIRL QSQLRREPTL AEWADAVGLS
301: CYTLQTQLHC ANRSKEKLFH ANLRMVVHIA KHYQGRGLSL QDLFQEGSTG LMKSIQKFKP EAGCRFGTYA YWWIRHAIRK AIFLHSRTIR LPENLYTLLG
401: KLIEAKKSYI QEGNLHPTKE ELARRVGITV EKLDNLLFAS RNPISMQQTL WVDQDTTFQE ITADSAIEIP GVTVSKQLMR RHVHNLLNIL SPKEKGIIRL
501: RFGIEDGKEK TLSDIGKVFG LTKERVRQLE CRALSKLKQC LESQGLDAYI DLLV

Best Arabidopsis Sequence Match ( AT1G08540.1 )
(BLAST)

001: MSSCLLPQFK CPPDSFSIHF RTSFCAPKHN KGSVFFQPQC AVSTSPALLT SMLDVAKLRL PSFDTDSDSL ISDRQWTYTR PDGPSTEAKY LEALASETLL
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS

Arabidopsis Description

SIGBRNA polymerase sigma factor sigB [Source:UniProtKB/Swiss-Prot;Acc:O22056]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.