CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16520	Soybean	mitochondrion, nucleus	93.36	93.36
KRH53442	Soybean	plastid	74.02	74.75
KRH64502	Soybean	plastid	72.85	71.87
VIT_16s0050g02520.t01	Wine grape	plastid	70.31	69.5
PGSC0003DMT400023432	Potato	plastid	64.84	64.34
Solyc03g007370.2.1	Tomato	plastid	64.45	64.08
CDX87140	Canola	plastid	61.13	62.23
Bra026466.1-P	Field mustard	nucleus	58.59	61.73
CDY19846	Canola	nucleus	58.4	61.27
GSMUA_Achr7P24590_001	Banana	plastid	59.77	60.59
Bra009735.1-P	Field mustard	plastid	60.16	60.39
AT5G24120.3	Thale cress	nucleus	60.94	60.35
CDX80416	Canola	nucleus	60.35	55.08
CDX88078	Canola	cytosol, mitochondrion, nucleus, vacuole	60.35	52.64
Zm00001d039194_P001	Maize	plastid	46.29	47.69
TraesCS1D01G436500.1	Wheat	plastid	45.7	47.37
TraesCS1B01G461600.1	Wheat	plastid	45.51	47.36
TraesCS1A01G426700.1	Wheat	plastid	45.51	47.17
EES18781	Sorghum	plastid	46.09	47.11
Os05t0586600-01	Rice	plastid	28.71	41.41
KRH51354	Soybean	nucleus	22.07	22.6
KRH60664	Soybean	nucleus	22.66	20.57
KRH67719	Soybean	nucleus	20.7	19.13
KRH04862	Soybean	mitochondrion	20.51	19.06
KRH39837	Soybean	plastid	18.36	18.69
KRH23963	Soybean	plastid	18.36	18.69
KRG96007	Soybean	nucleus	19.92	18.41
KRH19920	Soybean	plastid	19.73	17.6
KRH32532	Soybean	nucleus, plastid	19.73	17.57
KRH16276	Soybean	golgi, mitochondrion, nucleus, plastid	13.48	16.71

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.120.1810	EntrezGene:100796580	MapMan:15.6.2.1	EMBL:ACUP02008043	ncoils:Coil
EnsemblPlantsGene:GLYMA_13G041200	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016987	GO:GO:2000142	InterPro:IPR036388	UniProt:K7LXZ2
EnsemblPlants:KRH18145	ProteinID:KRH18145	ProteinID:KRH18145.1	ProteinID:KRH18146.1	ProteinID:KRH18147.1	PFAM:PF04539
PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046	PANTHER:PTHR30603	PANTHER:PTHR30603:SF4	InterPro:RNA_pol_sigma-70_dom
InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like
SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI000233D620	InterPro:WH-like_DNA-bd_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr13:+:13162176..13168574

Molecular Weight (calculated)

58626.4 Da

IEP (calculated)

10.628

GRAVY (calculated)

-0.502

Length

512 amino acids

Sequence
(BLAST)

001: MGVITVSTSA ARTPLRLNTR LISHQQVHKR PIILAFKGNK SNKTTLVSPQ EKIPLPLETA KKHQKRVGKT SESLKRVRAV STVETSPCTL DVDYNEAAAK
101: LENIYKLSPV SDTCNVEDID SKIERVLRRR KKVSEERDDG NCDNVVRNQN KKAKRLSLDK RIALKNNAKE EVIDQTQKKR NVKNRVQNID VLIRDYSAST
201: DLVSMDWKKM KIPPVLPSSE HAWLFKLMQP MKALLQAKED LKEVDKEITG GELADATNMS IIQVRKAIEV GRAARNKLIK HNLRLVLFVI NKYFQDFASG
301: PRFQDLCQAG VKGLITAIDR FEPKRRLQLS TYSLFWIRHS IVRSITLSSF TRVPFGLERV RVDIQRTKLK LTFELQRSPT EEELVERIGI SLERYHEVMK
401: ASKPILSLHS RHITTQEEYI NGITDVDGVN GDNRRQLAVL RLALDDVLDS LKPKESLVIR QRYGLDGKGD RTLGEIAGNL NISREIVRKH EVKALMKLKH
501: PARLDYLRRY VV

Best Arabidopsis Sequence Match ( AT5G24120.1 )
(BLAST)

001: MGVVSISSSA ARSPLGLGND LLTHRSSLKK PSIVAFKADD SSNSALIIPP REQVLIPAEK HNEKKREVTR RKPCKTPKKP LSLEHNSAPS CSLGVDYNEA
101: AARLESIYKL SPATTTLVED DVEDGGSKAK VSRRRKRKES GEEKKVVVRN NVKKEKRMSL DKRIALKRNV QEKPVVASVD KKVTKRQQEE EKIERLVRDY
201: SASNDIVSLD WKKMKIPPVL SSTEHAWLFK LMQPMKALLE VKDVLQKSLG REPREAEIAG EINMTAGEVK KKIEIGRAAR NKLIKHNLRL VLFVMNKYFH
301: EFTNGPKFQD LCQAGMRGLI TAIDRFEPKR KFRLSTYGLF WIRHAIIRSM TTSNFTRVPF GLESVRVEIY KAKTELWFEM GRPPTEDEVV ERLKITPERY
401: REVLRAAKPV LSLNSKHSVT QEEFINGITD VDGVGANNSR QPALLRLALD DVLDSLKPKE SLVIRQRYGL DGKGDRTLGE IAGNLNISRE MVRKHEVKAL
501: MKLKHQARVD YLRQYIV

Arabidopsis Description

SIGERNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.