Factsheet for Zm00001d039194_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18781	Sorghum	plastid	88.33	87.62
TraesCS1D01G436500.1	Wheat	plastid	72.43	72.87
TraesCS1B01G461600.1	Wheat	plastid	72.03	72.76
TraesCS1A01G426700.1	Wheat	plastid	72.03	72.47
Os05t0586600-01	Rice	plastid	39.03	54.65
GSMUA_Achr7P24590_001	Banana	plastid	49.9	49.11
CDY19846	Canola	nucleus	47.89	48.77
PGSC0003DMT400023432	Potato	plastid	50.5	48.64
Bra026466.1-P	Field mustard	nucleus	47.28	48.35
VIT_16s0050g02520.t01	Wine grape	plastid	50.1	48.07
Solyc03g007370.2.1	Tomato	plastid	49.7	47.96
KRH53442	Soybean	plastid	48.89	47.93
CDX87140	Canola	plastid	48.09	47.51
KRH16520	Soybean	mitochondrion, nucleus	47.89	46.48
KRH18145	Soybean	mitochondrion, nucleus	47.69	46.29
KRH64502	Soybean	plastid	48.09	46.05
AT5G24120.3	Thale cress	nucleus	47.69	45.84
Bra009735.1-P	Field mustard	plastid	46.48	45.29
CDX80416	Canola	nucleus	46.28	41.0
CDX88078	Canola	cytosol, mitochondrion, nucleus, vacuole	46.28	39.18
Zm00001d024507_P001	Maize	plastid	19.11	21.11
Zm00001d049494_P001	Maize	plastid	20.32	20.04
Zm00001d028585_P001	Maize	plastid	20.32	19.13
Zm00001d049160_P002	Maize	plastid	20.32	18.26
Zm00001d039181_P001	Maize	nucleus	20.12	17.7
Zm00001d012810_P003	Maize	plastid	13.28	15.42

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.120.1810	EntrezGene:103630810	MapMan:15.6.2.1	UniProt:A0A1D6MEE6	ProteinID:AQK89018.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016987	GO:GO:2000142	InterPro:IPR036388	PFAM:PF04539	PFAM:PF04542
PFAM:PF04545	PRINTS:PR00046	PANTHER:PTHR30603	PANTHER:PTHR30603:SF4	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70
InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659
SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI0002210B15	InterPro:WH-like_DNA-bd_sf	EnsemblPlantsGene:Zm00001d039194	EnsemblPlants:Zm00001d039194_P001
EnsemblPlants:Zm00001d039194_T001	SEG:seg	:	:	:	:

Description

Sigma70-like-transcription factor 8RNA polymerase sigma factor sigE chloroplastic/mitochondrial

Coordinates

chr6:-:172321981..172324231

Molecular Weight (calculated)

56092.4 Da

IEP (calculated)

10.673

GRAVY (calculated)

-0.728

Length

497 amino acids

Sequence
(BLAST)

001: MTSTVTTPSR PLAAGSRPRR SGPAVLSLSK GGGGQRRQRR LAPSTSCAVL ASPDKQSTAN KLPLSSRKQE EEVEKATDYN EVAAALETIY KLSPAVEVEE
101: KKRQGGNEDD GGGEAKKKRK RRVAGRSTVV VRSRRRRGGR RMDLGKRVEM KGAAAASREQ QQGGEEQGER EFEEMLLREH SVSTDMGSLD WKRMKIPPVL
201: TSSQSARLFK TMQPMKAIFE AQESLREELQ RDPTDAEVAE ATGMTVHQLR RRLDVGRAAR NKLIKHNLRL VPYALNKYYP DMGGDERFDE LCQAGANGLI
301: TAIDRFEPKR GFRISTYALF WIRHSIVRAM TLSSFTRFPF AMESERQEIG RAREELAFEL GRPPTDEEVR ARVGLSPQRY RDVLRMARPT YSLHARNRVT
401: QEELIGEVTD AEAVGVDAGG KHDALLRLAI DDLLDSLKPK ESLVIRQRFG LDGRGRRTLS EVAGNLSISR EMVRKYELKA LMKLKHPTRV EYLRRYM

Best Arabidopsis Sequence Match ( AT5G24120.1 )
(BLAST)

001: MGVVSISSSA ARSPLGLGND LLTHRSSLKK PSIVAFKADD SSNSALIIPP REQVLIPAEK HNEKKREVTR RKPCKTPKKP LSLEHNSAPS CSLGVDYNEA
101: AARLESIYKL SPATTTLVED DVEDGGSKAK VSRRRKRKES GEEKKVVVRN NVKKEKRMSL DKRIALKRNV QEKPVVASVD KKVTKRQQEE EKIERLVRDY
201: SASNDIVSLD WKKMKIPPVL SSTEHAWLFK LMQPMKALLE VKDVLQKSLG REPREAEIAG EINMTAGEVK KKIEIGRAAR NKLIKHNLRL VLFVMNKYFH
301: EFTNGPKFQD LCQAGMRGLI TAIDRFEPKR KFRLSTYGLF WIRHAIIRSM TTSNFTRVPF GLESVRVEIY KAKTELWFEM GRPPTEDEVV ERLKITPERY
401: REVLRAAKPV LSLNSKHSVT QEEFINGITD VDGVGANNSR QPALLRLALD DVLDSLKPKE SLVIRQRYGL DGKGDRTLGE IAGNLNISRE MVRKHEVKAL
501: MKLKHQARVD YLRQYIV

Arabidopsis Description

SIGERNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.