Factsheet for Bra009735.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026466.1-P	Field mustard	nucleus	82.55	86.63
CDX88078	Canola	cytosol, mitochondrion, nucleus, vacuole	99.61	86.54
AT5G24120.3	Thale cress	nucleus	84.9	83.75
VIT_16s0050g02520.t01	Wine grape	plastid	62.75	61.78
KRH53442	Soybean	plastid	61.37	61.74
PGSC0003DMT400023432	Potato	plastid	61.18	60.47
KRH18145	Soybean	mitochondrion, nucleus	60.39	60.16
KRH16520	Soybean	mitochondrion, nucleus	60.2	59.96
KRH64502	Soybean	plastid	60.59	59.54
Solyc03g007370.2.1	Tomato	plastid	60.0	59.42
GSMUA_Achr7P24590_001	Banana	plastid	57.84	58.42
TraesCS1A01G426700.1	Wheat	plastid	46.67	48.18
TraesCS1D01G436500.1	Wheat	plastid	46.27	47.77
TraesCS1B01G461600.1	Wheat	plastid	45.88	47.56
Zm00001d039194_P001	Maize	plastid	45.29	46.48
EES18781	Sorghum	plastid	45.49	46.31
Os05t0586600-01	Rice	plastid	29.61	42.54
Bra017213.1-P	Field mustard	plastid	21.57	20.64
Bra030732.1-P	Field mustard	plastid	22.94	20.53
Bra018617.1-P	Field mustard	plastid	22.75	20.24
Bra008513.1-P	Field mustard	nucleus	19.41	20.12
Bra008807.1-P	Field mustard	plastid	15.69	19.7
Bra014857.1-P	Field mustard	nucleus, plastid	18.24	17.0
Bra023430.1-P	Field mustard	plastid	14.71	10.32

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.120.1810	MapMan:15.6.2.1	EnsemblPlantsGene:Bra009735	EnsemblPlants:Bra009735.1	EnsemblPlants:Bra009735.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016987	GO:GO:2000142	InterPro:IPR036388	UniProt:M4CZT8
PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046	PANTHER:PTHR30603	PANTHER:PTHR30603:SF4
InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2
InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI000253F169	InterPro:WH-like_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

AT5G24120 (E=3e-179) SIGE, SIG5, ATSIG5 | SIGE (SIGMA FACTOR E); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor

Coordinates

chrA06:-:16912685..16914858

Molecular Weight (calculated)

58223.0 Da

IEP (calculated)

10.677

GRAVY (calculated)

-0.578

Length

510 amino acids

Sequence
(BLAST)

001: MGVVFISSSA ARSPLGLSTD LRTQRSSLKK PSIVAFKADD STPTNSSLII DKQKEKRAVA TRRKPCKDTK TTKSLDQHVA PSCPLDYNEA AARLESIYKL
101: SPPPATSLEE EDGIDGSSKV RVPRRRKRKE SGEEKKVVVR NNVKKEKRLT LDKRIALKRN VQEKPVNASS SAREKVTKKQ QEEEKIERLV RDYSASNDIV
201: SLDWKKMKIP PVVSSAEHTW LFKLMQPMKA LLQVKDELQK SMGREPREAE IAGEINMSVA EVKRKIEIGR AARNKLIKTN LRLVLFVMNK YFQDLTNGPK
301: FQDLCQAGMR GLITAIDRFE PKRKLRLSTY GLFWIRHAVI RSMTTSNFTR VPFGLESVRV EIYKAKMELL FEFGRLPTEE EVVKRLKISP ERYREVLRAA
401: KPVYSLNSKH AVTQEEFIKG ITDVDGVGAD NRRQLALLRL ALDDVLDSLK PKESLVIRQR YGLDGKGDRT LGEIAGNLNI SREMVRKHEV KALMKLKHQA
501: RVDYLRQYII

Best Arabidopsis Sequence Match ( AT5G24120.1 )
(BLAST)

001: MGVVSISSSA ARSPLGLGND LLTHRSSLKK PSIVAFKADD SSNSALIIPP REQVLIPAEK HNEKKREVTR RKPCKTPKKP LSLEHNSAPS CSLGVDYNEA
101: AARLESIYKL SPATTTLVED DVEDGGSKAK VSRRRKRKES GEEKKVVVRN NVKKEKRMSL DKRIALKRNV QEKPVVASVD KKVTKRQQEE EKIERLVRDY
201: SASNDIVSLD WKKMKIPPVL SSTEHAWLFK LMQPMKALLE VKDVLQKSLG REPREAEIAG EINMTAGEVK KKIEIGRAAR NKLIKHNLRL VLFVMNKYFH
301: EFTNGPKFQD LCQAGMRGLI TAIDRFEPKR KFRLSTYGLF WIRHAIIRSM TTSNFTRVPF GLESVRVEIY KAKTELWFEM GRPPTEDEVV ERLKITPERY
401: REVLRAAKPV LSLNSKHSVT QEEFINGITD VDGVGANNSR QPALLRLALD DVLDSLKPKE SLVIRQRYGL DGKGDRTLGE IAGNLNISRE MVRKHEVKAL
501: MKLKHQARVD YLRQYIV

Arabidopsis Description

SIGERNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.