Factsheet for Bra008807.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09826	Canola	plastid	96.8	93.79
AT5G13730.1	Thale cress	plastid	86.7	84.01
VIT_13s0064g00190.t01	Wine grape	nucleus	45.07	57.37
PGSC0003DMT400017455	Potato	nucleus	34.98	51.82
Bra023430.1-P	Field mustard	plastid	82.51	46.08
Solyc01g087690.1.1	Tomato	nucleus	42.86	41.33
GSMUA_Achr4P18530_001	Banana	plastid	40.89	35.47
Bra008513.1-P	Field mustard	nucleus	24.88	20.53
Bra017213.1-P	Field mustard	plastid	26.85	20.45
Bra030732.1-P	Field mustard	plastid	27.83	19.82
Bra018617.1-P	Field mustard	plastid	27.34	19.37
Bra014857.1-P	Field mustard	nucleus, plastid	24.38	18.1
Bra026466.1-P	Field mustard	nucleus	19.46	16.26
Bra009735.1-P	Field mustard	plastid	19.7	15.69

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	EnsemblPlantsGene:Bra008807	EnsemblPlants:Bra008807.1	EnsemblPlants:Bra008807.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016987	GO:GO:2000142	InterPro:IPR036388	UniProt:M4CX60	PFAM:PF04539
PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046	ScanProsite:PS00715	PANTHER:PTHR30603	PANTHER:PTHR30603:SF24
InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2
InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI0002543781	InterPro:WH-like_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

AT5G13730 (E=1e-167) SIG4, SIGD | SIG4 (SIGMA FACTOR 4); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor

Coordinates

chrA10:+:13925808..13927645

Molecular Weight (calculated)

45652.0 Da

IEP (calculated)

10.295

GRAVY (calculated)

-0.500

Length

406 amino acids

Sequence
(BLAST)

001: MCPSPPLPTV SPLLRTSHQC QPSPSSSSIK LGTTLFFNEA TVDRAAESSV VIKPDKWGSQ LEKRRKRRRR RRAGFERLEP EEDDDVDQVV EPVAEPVSIP
101: VGASRSGFLS RSDEVQLCLY LKEGAILENL GTSGEENGMV SVLLSSTGKG KKKRSANEIL CRRREAREKI TRCYRRLVVS IATGYQGKGL NLQDLIQEGS
201: IGLLRGAERF DPERGYKLST YVYWWIKQAI LRAIAHKSRL VKLPGSMWEL TAKVAEASNV LTRKLRRAPS SEEIAEHLNV NVSAVRLAVE RSRSPVSLDR
301: VASHYGRMTL QEIVRGPDET RPEEMVKREH MKEGIKQLLG TLTARESRVL GLYFGLNGET PMSFEEIGKS LKLSRERVRQ INGIALAKLR NVHNVNDLRI
401: YYSSSE

Best Arabidopsis Sequence Match ( AT5G13730.1 )
(BLAST)

001: MATTIPTTAT ATMCPSPPVP TISPLLRTTH QCQPSPSLSS PFSIKLSTAL VCGDTTVDRV VDSSVMIKPE KWGIQSEKRR KRRRRRRVGY ERLEPEEEEN
101: AGVEAEAETI SVPVVGASRS GFLSRLEEVQ LCLYLKEGAK LENLGTSVEE NEMVSVLLAS GRGKKKRSAN EILCRRKEAR EKITRCYRRL VVSIATGYQG
201: KGLNLQDLIQ EGSIGLLRGA ERFDPDRGYK LSTYVYWWIK QAILRAIAHK SRLVKLPGSM WELTAKVAEA SNVLTRKLRR QPSCEEIAEH LNLNVSAVRL
301: AVERSRSPVS LDRVASQNGR MTLQEIVRGP DETRPEEMVK REHMKHEIEQ LLGSLTARES RVLGLYFGLN GETPMSFEEI GKSLKLSRER VRQINGIALK
401: KLRNVHNVND LKIYYSSSE

Arabidopsis Description

SIGDRNA polymerase sigma factor sigD, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSL6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.