Factsheet for Bra023430.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85630	Canola	plastid	52.27	93.14
CDX91100	Canola	plastid	51.03	90.71
Bra008807.1-P	Field mustard	plastid	46.08	82.51
AT5G13730.1	Thale cress	plastid	46.35	80.43
VIT_13s0064g00190.t01	Wine grape	nucleus	23.66	53.92
PGSC0003DMT400017455	Potato	nucleus	18.71	49.63
Solyc01g087690.1.1	Tomato	nucleus	23.25	40.14
GSMUA_Achr4P18530_001	Banana	plastid	22.42	34.83
Bra017213.1-P	Field mustard	plastid	15.41	21.01
Bra008513.1-P	Field mustard	nucleus	13.48	19.92
Bra030732.1-P	Field mustard	plastid	14.44	18.42
Bra018617.1-P	Field mustard	plastid	14.31	18.15
Bra014857.1-P	Field mustard	nucleus, plastid	12.52	16.64
Bra026466.1-P	Field mustard	nucleus	10.04	15.02
Bra009735.1-P	Field mustard	plastid	10.32	14.71

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	Gene3D:3.40.50.150	MapMan:5.5.1.1	EnsemblPlantsGene:Bra023430
EnsemblPlants:Bra023430.1	EnsemblPlants:Bra023430.1-P	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355	GO:GO:0006629
GO:GO:0006694	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016740	GO:GO:0016987	GO:GO:0032259	GO:GO:2000142	InterPro:IPR030384
InterPro:IPR036388	UniProt:M4E3S7	InterPro:MeTrfase_SMT	InterPro:Methyltransf_11	PFAM:PF04539	PFAM:PF04542
PFAM:PF04545	PFAM:PF08241	PFAM:PF08498	PRINTS:PR00046	ScanProsite:PS00715	PFscan:PS51685
PANTHER:PTHR44068	PANTHER:PTHR44068:SF3	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3
InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	SUPFAM:SSF88659
SUPFAM:SSF88946	InterPro:Sterol_MeTrfase_C	TIGRFAMs:TIGR02937	UniParc:UPI00025434F9	InterPro:WH-like_DNA-bd_sf	SEG:seg

Description

AT5G13710 (E=2e-192) SMT1, CPH | SMT1 (STEROL METHYLTRANSFERASE 1); sterol 24-C-methyltransferase

Coordinates

chrA02:-:3341685..3348621

Molecular Weight (calculated)

82361.0 Da

IEP (calculated)

8.973

GRAVY (calculated)

-0.451

Length

727 amino acids

Sequence
(BLAST)

001: MVPTTATATM CPSPPLPTIS PLLRTTHQCQ PSPSSSTPSS IKLGTTLFSS EATVDESSVT IKPVKWGSQL EKRRKKRRRR RAGLDPEEEE NVVPEVETEP
101: KAVSVHVGAS RSGFLSRLEE VQLCFYLKEG AILENLETSV EENEMVSLLM KGKKKRSANE ILYRRREARE KITRCYRRLV VSIATGYQGK GLNLQDLIQE
201: GSIGLLRGAE RFDPERGYKL STYVYWWIKQ AILRAIAHKS RLVKLPGSMW ELTAKVAEAS NVLSRKLRRI PSSEEIADHL NIHVSAVRLA VERSRSPVSL
301: DRVLSHNGRM TLQEIVRGPD ETRPEEMVRK EHMKHEIKQL LGTLTARESR VLGLYFGLNG ETPMSFEEIG KKLKLSRERI LDRCIMSKTG SLDLASNLGG
401: NIDKSDVLTA VEKYEQYHVF HGGDEEERKA NYTDMVNKYY DLATSFYEYG WGESFHFAHR WKGESLRESI KRHEHFLALQ LGVKPGQKVL DVGCGIGGPL
501: REIARFSNSS VTGLNNNEYQ ITRGKELNRL AGVDKTCNFV KADFMKMPFP ENTFDAVYAI EATCHAPDAY GCYKEIFRVL KPGQCFAAYE WCMTDAFDPS
601: NAQHQKIKAE IEIGDGLPDI RLTSKCLEAL KQAGFEVIWE KDLAEDSPVP WYLPLDKNHF SLSSFRLTAV GRFITKNMVK VLEYIRLAPK GSQRVSDFLE
701: KAAEGLVDGG RREIFTPMYF FLARKPE

Best Arabidopsis Sequence Match ( AT5G13710.1 )
(BLAST)

001: MDLASNLGGK IDKSDVLTAV EKYEQYHVFH GGNEEERKAN YTDMVNKYYD LATSFYEYGW GESFHFAQRW KGESLRESIK RHEHFLALQL GIQPGQKVLD
101: VGCGIGGPLR EIARFSNSVV TGLNNNEYQI TRGKELNRLA GVDKTCNFVK ADFMKMPFPE NSFDAVYAIE ATCHAPDAYG CYKEIYRVLK PGQCFAAYEW
201: CMTDAFDPDN AEHQKIKGEI EIGDGLPDIR LTTKCLEALK QAGFEVIWEK DLAKDSPVPW YLPLDKNHFS LSSFRLTAVG RFITKNMVKI LEYIRLAPQG
301: SQRVSNFLEQ AAEGLVDGGR REIFTPMYFF LARKPE

Arabidopsis Description

SMT1Cycloartenol-C-24-methyltransferase [Source:UniProtKB/Swiss-Prot;Acc:Q9LM02]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.