Factsheet for Solyc01g087690.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 6
cytosol 2
nucleus 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	cytosol, mitochondrion, nucleus, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017455	Potato	nucleus	64.13	98.54
VIT_13s0064g00190.t01	Wine grape	nucleus	45.37	59.87
Bra008807.1-P	Field mustard	plastid	41.33	42.86
AT5G13730.1	Thale cress	plastid	42.52	42.72
CDX85630	Canola	plastid	41.09	42.4
CDX91100	Canola	plastid	41.09	42.3
CDY09826	Canola	plastid	41.81	42.0
GSMUA_Achr4P18530_001	Banana	plastid	40.38	36.32
Bra023430.1-P	Field mustard	plastid	40.14	23.25
Solyc09g008040.2.1	Tomato	nucleus, plastid	28.98	21.67
Solyc06g072710.2.1	Tomato	nucleus	25.65	21.39
Solyc03g097320.2.1	Tomato	nucleus, plastid	25.42	21.02
Solyc01g081490.2.1	Tomato	nucleus	29.69	20.39
Solyc08g065970.2.1	Tomato	nucleus	26.13	19.96
Solyc03g007370.2.1	Tomato	plastid	18.76	15.34

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	GO:GO:0001053	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009987	GO:GO:0016043
GO:GO:0016987	GO:GO:0071482	GO:GO:2000142	GO:GO:2001141	InterPro:IPR036388	UniProt:K4AYF9
PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046	ScanProsite:PS00715	PANTHER:PTHR30603
PANTHER:PTHR30603:SF24	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4
InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	EnsemblPlantsGene:Solyc01g087690.1	EnsemblPlants:Solyc01g087690.1.1
TIGRFAMs:TIGR02937	UniParc:UPI0002763397	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:

Description

RNA polymerase sigma factor sigD, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G13730) UniProtKB/Swiss-Prot;Acc:Q9ZSL6]

Coordinates

chr1:-:82615179..82617627

Molecular Weight (calculated)

48250.5 Da

IEP (calculated)

9.334

GRAVY (calculated)

-0.413

Length

421 amino acids

Sequence
(BLAST)

001: MAAWSCSNHS PASLFPYPSK LSTQPFFAYS ILYCPKNCSF LDPIHALTIE AANEAFTIEG SSLVFDTDFE ESSDKVEMFD EKIELALRRK KRRKRRRCCY
101: SECLEMEKED NIFNLKPLKT GFYLTHKEEA KYSWYLKEEA RIEILRKMVE ETSEIDLSSK QLAKAAGMST RRLDKLLINA KESQKKIIQC YRGLVVSVAA
201: SYQGKGLSLQ DLIQEGSIGL LHGAKKFNPK KGYKLSTYAY WWIRQAISRA VANKSRVIRL PGSISELVPK ICNANTELSR KLRRMPSYDE IAEALGMDVS
301: TVRLVIERNR APISIDQIVT TQGYMSLQNI ISGPEDTTPE ENVKRQMMKQ DLEKILQNVL CDREAKILKL HFGLNGDTPQ SFEEIGRVLK LSRERIRQIN
401: CTALSKLRES SMLDNFKMYI T

Best Arabidopsis Sequence Match ( AT5G13730.1 )
(BLAST)

001: MATTIPTTAT ATMCPSPPVP TISPLLRTTH QCQPSPSLSS PFSIKLSTAL VCGDTTVDRV VDSSVMIKPE KWGIQSEKRR KRRRRRRVGY ERLEPEEEEN
101: AGVEAEAETI SVPVVGASRS GFLSRLEEVQ LCLYLKEGAK LENLGTSVEE NEMVSVLLAS GRGKKKRSAN EILCRRKEAR EKITRCYRRL VVSIATGYQG
201: KGLNLQDLIQ EGSIGLLRGA ERFDPDRGYK LSTYVYWWIK QAILRAIAHK SRLVKLPGSM WELTAKVAEA SNVLTRKLRR QPSCEEIAEH LNLNVSAVRL
301: AVERSRSPVS LDRVASQNGR MTLQEIVRGP DETRPEEMVK REHMKHEIEQ LLGSLTARES RVLGLYFGLN GETPMSFEEI GKSLKLSRER VRQINGIALK
401: KLRNVHNVND LKIYYSSSE

Arabidopsis Description

SIGDRNA polymerase sigma factor sigD, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSL6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.