Factsheet for Solyc06g072710.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069555	Potato	nucleus	97.23	97.23
Solyc03g097320.2.1	Tomato	nucleus, plastid	76.44	75.83
CDY52962	Canola	nucleus	64.16	67.5
CDY56127	Canola	nucleus	65.15	67.01
Bra008513.1-P	Field mustard	nucleus	65.15	66.87
KRH23963	Soybean	plastid	65.94	66.2
KRH39837	Soybean	plastid	65.35	65.61
AT1G64860.1	Thale cress	nucleus	64.55	64.94
HORVU7Hr1G069520.2	Barley	nucleus	37.62	63.33
GSMUA_Achr1P10700_001	Banana	nucleus	52.67	62.88
GSMUA_Achr11P...	Banana	nucleus	54.85	60.35
VIT_16s0039g00660.t01	Wine grape	plastid	68.12	59.52
Os08t0163400-01	Rice	nucleus	47.72	57.79
EES13412	Sorghum	plastid	52.48	53.0
Zm00001d049494_P001	Maize	plastid	52.28	52.38
Zm00001d024507_P001	Maize	plastid	45.54	51.11
TraesCS7D01G292000.1	Wheat	plastid	51.29	50.68
TraesCS7B01G184800.1	Wheat	nucleus, plastid	51.09	50.49
TraesCS7A01G297900.2	Wheat	plastid	50.69	50.2
Solyc01g087690.1.1	Tomato	nucleus	21.39	25.65
Solyc09g008040.2.1	Tomato	nucleus, plastid	25.74	23.09
Solyc01g081490.2.1	Tomato	nucleus	25.15	20.72
Solyc03g007370.2.1	Tomato	plastid	20.0	19.61
Solyc08g065970.2.1	Tomato	nucleus	20.0	18.33

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016987	GO:GO:2000142
InterPro:IPR036388	UniProt:K4C8Z1	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046
ScanProsite:PS00715	PANTHER:PTHR30603	PANTHER:PTHR30603:SF14	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2
InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946
EnsemblPlantsGene:Solyc06g072710.2	EnsemblPlants:Solyc06g072710.2.1	TIGRFAMs:TIGR02937	UniParc:UPI00027659B1	InterPro:WH-like_DNA-bd_sf	SEG:seg

Description

No Description!

Coordinates

chr6:+:44844070..44848989

Molecular Weight (calculated)

57096.3 Da

IEP (calculated)

10.141

GRAVY (calculated)

-0.448

Length

505 amino acids

Sequence
(BLAST)

001: MAIAAVIGPY AGNRILSSSF YYSDLTEKLA CSGDHALICN PTRNVINAKK SSNYSAGYVS NRKKQSVKAV KEHVNIASNH SDVEPMVEML KKLQNESCSK
101: EDPVEVLLLL QKSMLEKQWN LSAEKTLEAF PPNEKNCKKK MQITCSGTSA RRRRMDTRKR VQIPKASAEA NSASKRLRSV VGPELQQNRL RGYMNGVVNQ
201: ELLTHKEVVQ LSKKIKFGLY LEEQKASLKE RLGCEPSDDQ LAVSLKMSLA DLRSTLMECS LAREKLAMSN VRLVMSIAQR YDSMGTEMAD LIQGGLIGLL
301: RGIEKFDHSR GFKISTYVYW WIRQGVSRAL VDNSRTLRLP IHLHERLSLI RNAKVKLKDS GITPSIEKIA ECLNMSQKKV RNATEASSKV FSLDREAYPS
401: LNGLPGATLH SYIADNRLEN NPWHGVDGWA LKDEVNNLIS SILRERERDI IRLYYGLDNE CLTWEDISRR IGLSRERVRQ VGLVALEKLK HAARKKQLDA
501: MLVKH

Best Arabidopsis Sequence Match ( AT1G64860.1 )
(BLAST)

001: MATAAVIGLN TGKRLLSSSF YHSDVTEKFL SVNDHCSSQY HIASTKSGIT AKKASNYSPS FPSSNRHTQS AKALKESVDV ASTEKPWLPN GTDKELEEEC
101: YDDDDLISHS VEAILLLQKS MLEKSWNLSF EKAVSSEYPG KGTIRKKKIP VITCSGISAR QRRIGAKKKT NMTHVKAVSD VSSGKQVRGY VKGVISEDVL
201: SHVEVVRLSK KIKSGLRLDD HKSRLKDRLG CEPSDEQLAV SLKISRAELQ AWLMECHLAR EKLAMSNVRL VMSIAQRYDN LGAEMSDLVQ GGLIGLLRGI
301: EKFDSSKGFR ISTYVYWWIR QGVSRALVDN SRTLRLPTHL HERLGLIRNA KLRLQEKGIT PSIDRIAESL NMSQKKVRNA TEAVSKVFSL DRDAFPSLNG
401: LPGETHHSYI ADTRLENNPW HGYDDLALKE EVSKLISATL GEREKEIIRL YYGLDKECLT WEDISKRIGL SRERVRQVGL VALEKLKHAA RKRKMEAMIL
501: KN

Arabidopsis Description

SIGARNA polymerase sigma factor sigA [Source:UniProtKB/Swiss-Prot;Acc:O24629]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.