Factsheet for GSMUA_Achr11P08010_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P10700_001	Banana	nucleus	75.16	81.56
HORVU7Hr1G069520.2	Barley	nucleus	41.39	63.33
CDY52962	Canola	nucleus	61.0	58.33
Os08t0163400-01	Rice	nucleus	52.94	58.27
Solyc03g097320.2.1	Tomato	nucleus, plastid	64.05	57.76
KRH23963	Soybean	plastid	62.75	57.26
CDY56127	Canola	nucleus	61.0	57.03
Bra008513.1-P	Field mustard	nucleus	60.78	56.71
KRH39837	Soybean	plastid	61.66	56.26
AT1G64860.1	Thale cress	nucleus	60.78	55.58
PGSC0003DMT400069555	Potato	nucleus	60.78	55.25
Solyc06g072710.2.1	Tomato	nucleus	60.35	54.85
EES13412	Sorghum	plastid	56.86	52.2
Zm00001d049494_P001	Maize	plastid	56.86	51.79
Zm00001d024507_P001	Maize	plastid	50.33	51.33
TraesCS7A01G297900.2	Wheat	plastid	56.43	50.78
TraesCS7D01G292000.1	Wheat	plastid	56.43	50.68
VIT_16s0039g00660.t01	Wine grape	plastid	63.62	50.52
TraesCS7B01G184800.1	Wheat	nucleus, plastid	55.77	50.1
PGSC0003DMT400068109	Potato	nucleus	55.99	42.13
GSMUA_Achr4P30300_001	Banana	nucleus	12.85	29.35
GSMUA_Achr7P17330_001	Banana	nucleus, plastid	26.8	22.45
GSMUA_Achr7P04860_001	Banana	nucleus	26.36	22.08
GSMUA_Achr4P18530_001	Banana	plastid	21.35	20.94
GSMUA_Achr11P...	Banana	nucleus	25.05	19.86
GSMUA_Achr7P24590_001	Banana	plastid	20.04	18.22
GSMUA_Achr4P01060_001	Banana	golgi, mitochondrion, nucleus, plastid	18.95	15.26

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016987
GO:GO:2000142	EnsemblPlantsGene:GSMUA_Achr11G08010_001	EnsemblPlants:GSMUA_Achr11P08010_001	EnsemblPlants:GSMUA_Achr11T08010_001	InterPro:IPR036388	UniProt:M0RQD1
PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046	ScanProsite:PS00715	PANTHER:PTHR30603
PANTHER:PTHR30603:SF14	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4
InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI000295D0FF
InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:	:

Description

RNA polymerase sigma factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G08010_001]

Coordinates

chr11:+:6214511..6219508

Molecular Weight (calculated)

51729.1 Da

IEP (calculated)

10.674

GRAVY (calculated)

-0.402

Length

459 amino acids

Sequence
(BLAST)

001: MMATSAVVGL STGKRLLTSS FCPTDLAEKL FPILDQTTLP FPTASTKSVV VAQKPSPFRP NAPPTRHKSM LEKQWELPFT QMTTVAAPGN GCRVPEIARS
101: GISARERRMI SRRKCIGHRD AMAPASRVRQ LRSCVSPELL NSDASGYVRG TVSESLLTHA EVVNLSKKIR AGMRVEEHRS RLKEKMGYEP TDKQLASSLR
201: MSRAELHTKM IECSLAREKL AMSNVRLVMS IAQKYDNMGT AMADLIQGGL IGLLRGIEKF DASKGFKIST YVYWWIRQGV TRTLFKNSRT LRLPAHLHER
301: LGSIRHAKIR LEEKGIAPSI DKLAESLNMS QKKVRNATQA ASIVLSIDRE AFPSLNGLPG KTLHSYIADR NLENNPWHGF EEWSLKDEVD KLLYMTLSNR
401: ERDIISLYHG IDNECHTWED IGKKFGLSRE RVRQVGLVAM EKLKHAARRR KLEAMLVKQ

Best Arabidopsis Sequence Match ( AT1G64860.1 )
(BLAST)

001: MATAAVIGLN TGKRLLSSSF YHSDVTEKFL SVNDHCSSQY HIASTKSGIT AKKASNYSPS FPSSNRHTQS AKALKESVDV ASTEKPWLPN GTDKELEEEC
101: YDDDDLISHS VEAILLLQKS MLEKSWNLSF EKAVSSEYPG KGTIRKKKIP VITCSGISAR QRRIGAKKKT NMTHVKAVSD VSSGKQVRGY VKGVISEDVL
201: SHVEVVRLSK KIKSGLRLDD HKSRLKDRLG CEPSDEQLAV SLKISRAELQ AWLMECHLAR EKLAMSNVRL VMSIAQRYDN LGAEMSDLVQ GGLIGLLRGI
301: EKFDSSKGFR ISTYVYWWIR QGVSRALVDN SRTLRLPTHL HERLGLIRNA KLRLQEKGIT PSIDRIAESL NMSQKKVRNA TEAVSKVFSL DRDAFPSLNG
401: LPGETHHSYI ADTRLENNPW HGYDDLALKE EVSKLISATL GEREKEIIRL YYGLDKECLT WEDISKRIGL SRERVRQVGL VALEKLKHAA RKRKMEAMIL
501: KN

Arabidopsis Description

SIGARNA polymerase sigma factor sigA [Source:UniProtKB/Swiss-Prot;Acc:O24629]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.