Factsheet for GSMUA_Achr4P01060_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010456	Potato	nucleus	5.79	47.83
VIT_04s0008g00600.t01	Wine grape	plastid	41.75	42.42
Os05t0589200-01	Rice	plasma membrane	34.04	41.81
TraesCS1B01G467100.1	Wheat	plastid	39.65	39.72
TraesCS1A01G431600.2	Wheat	plastid	39.47	39.47
TraesCS1D01G440900.1	Wheat	plastid	39.82	39.27
KRH04862	Soybean	mitochondrion	37.72	39.02
Zm00001d039181_P001	Maize	nucleus	38.07	38.41
EES18778	Sorghum	plastid	39.65	38.31
KRH16276	Soybean	golgi, mitochondrion, nucleus, plastid	26.67	36.8
PGSC0003DMT400065483	Potato	mitochondrion	35.44	36.4
Bra014857.1-P	Field mustard	nucleus, plastid	34.91	36.38
Solyc08g065970.2.1	Tomato	nucleus	34.56	35.75
AT3G53920.1	Thale cress	plastid	35.79	35.73
GSMUA_Achr4P30300_001	Banana	nucleus	11.58	32.84
CDX76185	Canola	plastid	35.79	30.45
CDY13153	Canola	plastid	34.91	29.61
GSMUA_Achr7P04860_001	Banana	nucleus	25.26	26.28
GSMUA_Achr7P17330_001	Banana	nucleus, plastid	24.74	25.73
GSMUA_Achr4P18530_001	Banana	plastid	19.47	23.72
GSMUA_Achr11P...	Banana	nucleus	21.4	21.07
GSMUA_Achr1P10700_001	Banana	nucleus	14.91	20.09
GSMUA_Achr7P24590_001	Banana	plastid	17.02	19.21
GSMUA_Achr11P...	Banana	nucleus	15.26	18.95

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	ncoils:Coil	GO:GO:0001053	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006352
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009628	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0016987	GO:GO:0071482
GO:GO:2000142	GO:GO:2001141	EnsemblPlantsGene:GSMUA_Achr4G01060_001	EnsemblPlants:GSMUA_Achr4P01060_001	EnsemblPlants:GSMUA_Achr4T01060_001	InterPro:IPR036388
UniProt:M0SK23	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046	PANTHER:PTHR30603
PANTHER:PTHR30603:SF13	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4
InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI000295B471
InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:	:

Description

RNA polymerase sigma factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G01060_001]

Coordinates

chr4:+:866213..871475

Molecular Weight (calculated)

65012.5 Da

IEP (calculated)

10.121

GRAVY (calculated)

-0.352

Length

570 amino acids

Sequence
(BLAST)

001: MGLRFMVVSK GWVSTKIPPP PLLPNPCSSF SSVCLLHTVG VREVYVKFVR LPLQCTVLDG GKLLHTSTLR ANASLFGEIQ SVEGISDNAP EVKLDGWSSR
101: ICLDLDKQIP MMEASSAFHA SLTVKTPLEF NLLMENIDRI EDLIAGADMV RLERDILTHI GSLGALKLFH TSCISRALMG STVVYSDFMV NKHLSDCPSE
201: PLLDDKKGST IVHSGKKEKR KLRRARAMEK ASKMSSPQIF SKGRHLLKRS LLLEKTVSRK LLGHFESENR REVIARNESE MSMGVKEIAN LEKICKELEE
301: EIGRPPSYTR WAEAAGVDMR TLQWRLQFGW YCRDTLIKST RSLVMFIAKN YRGMGIAFDD LLQAGYVGVL NGAERFDMKK GNRFSTYVQY WIRKSILAMV
401: ARHSRMIQVP VRMESMIKRI QKARRTHYNR EGRQPQDEEI AKLTGLSLAK VRLASKCSRA VGSIEQEIRD GWRTKFREII ADASVGTPDE VIEKQHLRQD
501: ALNLLQTLHP RERQVLALRY GLEDGSCKSL EEVGRLCHVT KEWIRKIEKE AWSKIRNEEM PKKLSHYRQL

Best Arabidopsis Sequence Match ( AT3G53920.1 )
(BLAST)

001: MASFNSFPIP KQIVGSSSSS SSSTSRPRIL VRSSLTSSMT STNSMLVFVH PHPLIKHWLS LLRSDQTSFP IFVRIPMTSV VATRWSFLSS VKEESRIYQN
101: DSLKACGCAS VSPYTAQNNV YVELKDPKEN IGVGSAERSY SSRSMLQYNL LAKNLLALEE TFVALDSVRM ERDIMLQMGK LGAAELFKTC LSRYRGSSIT
201: SCLSDTTELV DTTPNQQVFV SSRRKVKKKA RRSSVTAENG DQSSLPIGLR TTWNNIDVPR VRRPPKYRKK RERISRNETE MSTGVKIVAD MERIRTQLEE
301: ESGKVASLSC WAAAAGMNEK LLMRNLHYGW YCRDELVKST RSLVLFLARN YRGLGIAHED LIQAGYVGVL QGAERFDHTR GYKFSTYVQY WIRKSMSTMV
401: SRHARGVHIP SSIIRTINHI QKARKTLKTS HGIKYAADEE IAKLTGHSVK KIRAANQCLK VVGSIDKKVG DCFTTKFLEF TPDTTMESPE EAVMRQSARR
501: DIHDLLEGLE PREKQVMVLR YGLQDYRPKS LEEIGKLLKV SKEWIRKIER RAMAKLRDQP NAEDLRYYLN Q

Arabidopsis Description

SIGCRNA polymerase sigma factor sigC [Source:UniProtKB/Swiss-Prot;Acc:O24621]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.