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Banana
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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 6
  • mitochondrion 1
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_16s0050g02520.t01 Wine grape plastid 64.75 63.13
PGSC0003DMT400023432 Potato plastid 64.16 62.79
Solyc03g007370.2.1 Tomato plastid 63.17 61.94
KRH53442 Soybean plastid 61.39 61.14
KRH18145 Soybean mitochondrion, nucleus 60.59 59.77
KRH16520 Soybean mitochondrion, nucleus 60.2 59.38
KRH64502 Soybean plastid 60.79 59.15
CDX87140 Canola plastid 58.61 58.85
CDY19846 Canola nucleus 56.44 58.4
Bra009735.1-P Field mustard plastid 58.42 57.84
Bra026466.1-P Field mustard nucleus 55.45 57.61
AT5G24120.3 Thale cress nucleus 58.61 57.25
CDX80416 Canola nucleus 58.22 52.41
TraesCS1A01G426700.1 Wheat plastid 50.3 51.42
EES18781 Sorghum plastid 50.49 50.9
TraesCS1D01G436500.1 Wheat plastid 49.7 50.81
TraesCS1B01G461600.1 Wheat plastid 49.31 50.61
CDX88078 Canola cytosol, mitochondrion, nucleus, vacuole 58.22 50.09
Zm00001d039194_P001 Maize plastid 49.11 49.9
Os05t0586600-01 Rice plastid 31.29 44.51
GSMUA_Achr4P30300_001 Banana nucleus 12.48 31.34
GSMUA_Achr1P10700_001 Banana nucleus 19.01 22.7
GSMUA_Achr11P... Banana nucleus 18.22 20.04
GSMUA_Achr7P04860_001 Banana nucleus 20.99 19.34
GSMUA_Achr7P17330_001 Banana nucleus, plastid 20.79 19.16
GSMUA_Achr11P... Banana nucleus 20.4 17.79
GSMUA_Achr4P01060_001 Banana golgi, mitochondrion, nucleus, plastid 19.21 17.02
GSMUA_Achr4P18530_001 Banana plastid 15.25 16.45
Protein Annotations
Gene3D:1.10.10.10Gene3D:1.20.120.1810MapMan:15.6.2.1GO:GO:0001053GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005739GO:GO:0006091GO:GO:0006139GO:GO:0006352GO:GO:0006355
GO:GO:0006950GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009553
GO:GO:0009628GO:GO:0009658GO:GO:0009987GO:GO:0010114GO:GO:0010207GO:GO:0010218
GO:GO:0015979GO:GO:0016043GO:GO:0016987GO:GO:0045893GO:GO:0071472GO:GO:0071483
GO:GO:2000142GO:GO:2001141EnsemblPlantsGene:GSMUA_Achr7G24590_001EnsemblPlants:GSMUA_Achr7P24590_001EnsemblPlants:GSMUA_Achr7T24590_001InterPro:IPR036388
UniProt:M0TKE5PFAM:PF04539PFAM:PF04542PFAM:PF04545PRINTS:PR00046PANTHER:PTHR30603
PANTHER:PTHR30603:SF4InterPro:RNA_pol_sigma-70_domInterPro:RNA_pol_sigma70InterPro:RNA_pol_sigma70_r2InterPro:RNA_pol_sigma70_r3InterPro:RNA_pol_sigma70_r4
InterPro:RNA_pol_sigma_r2InterPro:RNA_pol_sigma_r3/r4-likeSUPFAM:SSF88659SUPFAM:SSF88946TIGRFAMs:TIGR02937UniParc:UPI0002964EFC
InterPro:WH-like_DNA-bd_sfSEG:seg::::
Description
RNA polymerase sigma factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G24590_001]
Coordinates
chr7:-:26534513..26538302
Molecular Weight (calculated)
56627.6 Da
IEP (calculated)
10.448
GRAVY (calculated)
-0.444
Length
505 amino acids
Sequence
(BLAST)
001: MGVVAVPSSA SRSPFGSGLA VRRSSPLRRP FFFLAFKGGP GAKCSALVTP PEAVTQEAVK EPKKSPARAA KRSKRGKAVA VVAAPTTAAP SDACPRDPDY
101: SEVAAALENI YKLSPADVSD GEESGRQTVV KDGSLGVDNV VRNRKKRVKR LGLEERISMR RRPKEEAGTE ARRGEGREFD EDVEILVREY SGSTNLDSLD
201: WKRMKIPPVL SSAEHTWLFK LMQPMKAILQ VKEGMYKDLN REPTDGELAD AVNMSVPQLR RHIEVARAAR DKLIKHNLRL VLFVINKYYP EIASGQKFQE
301: FCQAGAKGLI TAIDRFEPKR GFRLSTYSLF WIRHSIIRSM TLSSFTKVPF GIESVRQEIK KAKLELSFEL GRLPTEEEIV DRVGISLERY NEVMKASKPV
401: LSLNARHVVT QEEFINGITD IDVGGDKRRQ PAVLRLALDD VLDSLRPKES LVIRQRYGLD GKGDRTLGEI AGNLNISREM VRKHELKALL KLKHPTRVDY
501: LRRYV
Best Arabidopsis Sequence Match ( AT5G24120.1 )
(BLAST)
001: MGVVSISSSA ARSPLGLGND LLTHRSSLKK PSIVAFKADD SSNSALIIPP REQVLIPAEK HNEKKREVTR RKPCKTPKKP LSLEHNSAPS CSLGVDYNEA
101: AARLESIYKL SPATTTLVED DVEDGGSKAK VSRRRKRKES GEEKKVVVRN NVKKEKRMSL DKRIALKRNV QEKPVVASVD KKVTKRQQEE EKIERLVRDY
201: SASNDIVSLD WKKMKIPPVL SSTEHAWLFK LMQPMKALLE VKDVLQKSLG REPREAEIAG EINMTAGEVK KKIEIGRAAR NKLIKHNLRL VLFVMNKYFH
301: EFTNGPKFQD LCQAGMRGLI TAIDRFEPKR KFRLSTYGLF WIRHAIIRSM TTSNFTRVPF GLESVRVEIY KAKTELWFEM GRPPTEDEVV ERLKITPERY
401: REVLRAAKPV LSLNSKHSVT QEEFINGITD VDGVGANNSR QPALLRLALD DVLDSLKPKE SLVIRQRYGL DGKGDRTLGE IAGNLNISRE MVRKHEVKAL
501: MKLKHQARVD YLRQYIV
Arabidopsis Description
SIGERNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNX9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.