CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18145	Soybean	mitochondrion, nucleus	93.36	93.36
KRH53442	Soybean	plastid	73.24	73.96
KRH64502	Soybean	plastid	71.68	70.71
VIT_16s0050g02520.t01	Wine grape	plastid	69.53	68.73
PGSC0003DMT400023432	Potato	plastid	64.26	63.76
Solyc03g007370.2.1	Tomato	plastid	63.87	63.5
CDX87140	Canola	plastid	60.55	61.63
Bra026466.1-P	Field mustard	nucleus	58.2	61.32
CDY19846	Canola	nucleus	58.4	61.27
GSMUA_Achr7P24590_001	Banana	plastid	59.38	60.2
Bra009735.1-P	Field mustard	plastid	59.96	60.2
AT5G24120.3	Thale cress	nucleus	60.74	60.15
CDX80416	Canola	nucleus	60.16	54.9
CDX88078	Canola	cytosol, mitochondrion, nucleus, vacuole	60.16	52.47
TraesCS1D01G436500.1	Wheat	plastid	46.29	47.98
TraesCS1B01G461600.1	Wheat	plastid	46.09	47.97
Zm00001d039194_P001	Maize	plastid	46.48	47.89
TraesCS1A01G426700.1	Wheat	plastid	46.09	47.77
EES18781	Sorghum	plastid	46.29	47.31
Os05t0586600-01	Rice	plastid	29.3	42.25
KRH51354	Soybean	nucleus	21.88	22.4
KRH60664	Soybean	nucleus	22.46	20.39
KRH39837	Soybean	plastid	18.75	19.09
KRH23963	Soybean	plastid	18.75	19.09
KRH04862	Soybean	mitochondrion	20.51	19.06
KRH67719	Soybean	nucleus	20.31	18.77
KRG96007	Soybean	nucleus	19.53	18.05
KRH19920	Soybean	plastid	19.53	17.42
KRH32532	Soybean	nucleus, plastid	19.53	17.39
KRH16276	Soybean	golgi, mitochondrion, nucleus, plastid	13.48	16.71

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	EntrezGene:100811515	MapMan:15.6.2.1	EMBL:AB649975	EMBL:ACUP02008928
ncoils:Coil	EnsemblPlantsGene:GLYMA_14G160600	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016987	GO:GO:2000142	UniProt:I0IJN9
InterPro:IPR036388	EnsemblPlants:KRH16520	ProteinID:KRH16520	ProteinID:KRH16520.1	PFAM:PF04539	PFAM:PF04542
PFAM:PF04545	PRINTS:PR00046	PANTHER:PTHR30603	PANTHER:PTHR30603:SF4	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70
InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659
SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI000233ACC2	InterPro:WH-like_DNA-bd_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr14:-:37369097..37374323

Molecular Weight (calculated)

58690.5 Da

IEP (calculated)

10.524

GRAVY (calculated)

-0.452

Length

512 amino acids

Sequence
(BLAST)

001: MGVVTVSTLA ARTPLRLNTR LTSHQQVHKR PLIVAFKGNK LNKAALVSPQ EQIPLPIETA KKDQKRVGKT SESLKRVRAV SIVETSPCTL DMDYNEAAAK
101: LENIYKLSPV SDTCNMEDID SKVERVLWRR RKVGNEHDDE NCDIVVRNQN KKAKRLSLDK RITLKNNAKE EVIDQTQKIR NVKNRVQNID VLIRDYSAST
201: DLVSMDWKKM KIPAVLPSSE HAWLFKLMQP MKALLQAKED LQSVGKEITD GELADATNMS IIQVRKAIEV GRAARNKLIK HNLRLVLFVI SKYFQDFASG
301: RRFQDLCQAG VKGLITAIDR FEPKRRLQLS TYSLFWIRHS IVRSITLSSF TRVPFGLERV RVDIQRTKLK LTFELQRSPT EEELVERIGI SPERYYEVMK
401: ASKPILSLHS RHITTQEEYI NGITDVDGVN GDNRRQLAVL RLALDDVLDS LKPKESLVIR QRYGLDGKGD RTLGEIAGNL NISREMVRKH EVKALMKLKH
501: PARLDYLRRY VV

Best Arabidopsis Sequence Match ( AT5G24120.1 )
(BLAST)

001: MGVVSISSSA ARSPLGLGND LLTHRSSLKK PSIVAFKADD SSNSALIIPP REQVLIPAEK HNEKKREVTR RKPCKTPKKP LSLEHNSAPS CSLGVDYNEA
101: AARLESIYKL SPATTTLVED DVEDGGSKAK VSRRRKRKES GEEKKVVVRN NVKKEKRMSL DKRIALKRNV QEKPVVASVD KKVTKRQQEE EKIERLVRDY
201: SASNDIVSLD WKKMKIPPVL SSTEHAWLFK LMQPMKALLE VKDVLQKSLG REPREAEIAG EINMTAGEVK KKIEIGRAAR NKLIKHNLRL VLFVMNKYFH
301: EFTNGPKFQD LCQAGMRGLI TAIDRFEPKR KFRLSTYGLF WIRHAIIRSM TTSNFTRVPF GLESVRVEIY KAKTELWFEM GRPPTEDEVV ERLKITPERY
401: REVLRAAKPV LSLNSKHSVT QEEFINGITD VDGVGANNSR QPALLRLALD DVLDSLKPKE SLVIRQRYGL DGKGDRTLGE IAGNLNISRE MVRKHEVKAL
501: MKLKHQARVD YLRQYIV

Arabidopsis Description

SIGERNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.