CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, vacuole, nucleus, cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus, vacuole
Any Predictor:	mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009735.1-P	Field mustard	plastid	86.54	99.61
CDX80416	Canola	nucleus	90.8	95.01
CDX87140	Canola	plastid	75.47	88.07
CDY19846	Canola	nucleus	71.72	86.27
AT5G24120.3	Thale cress	nucleus	73.59	83.56
VIT_16s0050g02520.t01	Wine grape	plastid	54.34	61.58
KRH53442	Soybean	plastid	53.15	61.54
KRH18145	Soybean	mitochondrion, nucleus	52.64	60.35
PGSC0003DMT400023432	Potato	plastid	52.98	60.27
KRH16520	Soybean	mitochondrion, nucleus	52.47	60.16
KRH64502	Soybean	plastid	52.47	59.34
Solyc03g007370.2.1	Tomato	plastid	51.96	59.22
GSMUA_Achr7P24590_001	Banana	plastid	50.09	58.22
TraesCS1A01G426700.1	Wheat	plastid	40.37	47.98
TraesCS1D01G436500.1	Wheat	plastid	40.03	47.57
TraesCS1B01G461600.1	Wheat	plastid	39.69	47.36
Zm00001d039194_P001	Maize	plastid	39.18	46.28
EES18781	Sorghum	plastid	39.35	46.11
Os05t0586600-01	Rice	plastid	25.38	41.97
CDY66142	Canola	nucleus	15.5	26.92
CDX79708	Canola	endoplasmic reticulum, extracellular	5.62	22.15
CDY52962	Canola	nucleus	16.7	20.42
CDY31138	Canola	plastid	19.76	20.24
CDX97496	Canola	plastid	19.59	20.14
CDX93555	Canola	plastid	19.59	20.07
CDY56127	Canola	nucleus	16.7	19.96
CDX95052	Canola	plastid	19.76	19.9
CDY18468	Canola	plastid	18.4	19.85
CDY09826	Canola	plastid	13.97	19.57
CDX91100	Canola	plastid	13.63	19.56
CDX85630	Canola	plastid	13.46	19.36
CDX76185	Canola	plastid	15.67	13.73
CDY13153	Canola	plastid	15.5	13.54
CDY59157	Canola	cytosol	0.0	0.0
CDY54028	Canola	cytosol	0.0	0.0
CDX73516	Canola	cytosol	0.0	0.0
CDX67575	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.120.1810	MapMan:15.6.2.1	GO:A0A078DLI1	EnsemblPlants:CDX88078	ProteinID:CDX88078
ProteinID:CDX88078.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006352
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00147501001
InterPro:IPR036388	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046	PANTHER:PTHR30603
PANTHER:PTHR30603:SF4	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4
InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI0004EE5C0D
InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:	:

Description

BnaA06g26690D

Coordinates

chrLK031854:-:457396..460896

Molecular Weight (calculated)

66722.5 Da

IEP (calculated)

10.514

GRAVY (calculated)

-0.452

Length

587 amino acids

Sequence
(BLAST)

001: MVVKPPLYLG PIIAEKTIHV CDISSLINLI VFYVLFKKSR EAESKPDEEA SLSLSLSDTA KVRLAIPEVI ASKDFIVMGV VFISSSAARS PLGLSTDLRT
101: QRSSLKKPSI VAFKADDSTP TNSSLIIDKQ KEKRAVATRR KPCKDTKTTK SLDQHVAPSC PLDYNEAAAR LESIYKLSPP PGTSLEEEDG IDGSSKVRVP
201: RRRKRKESGE EKKVVVRNNV KKEKRLTLDK RIALKRNVQE KPVNASSSAR EKVTKKQQEE EKIERLVRDY SASNDIVSLD WKKMKIPPVV SSAEHTWLFK
301: LMQPMKALLQ VKDELQKSMG REPREAEIAG EINMSVAEVK RKIEIGRAAR NKLIKTNLRL VLFVMNKYFQ DLTNGPKFQD LCQAGMRGLI TAIDRFEPKR
401: KLRLSTYGLF WIRHAVIRSM TTSNFTRVPF GLESVRVEIY KTKMELLFEF GRLPTEEEVV KRLKISPERY REVLRAAKPV YSLNSKHAVT QEEFIKGITD
501: VDGVGADNRR QLALLRLALD DVLDSLKPKE SLVIRQRYGL DGKGDRTLGE IAGNLNISRE MVRKHEVKAL MKLKHQARVD YLRQYII

Best Arabidopsis Sequence Match ( AT5G24120.1 )
(BLAST)

001: MGVVSISSSA ARSPLGLGND LLTHRSSLKK PSIVAFKADD SSNSALIIPP REQVLIPAEK HNEKKREVTR RKPCKTPKKP LSLEHNSAPS CSLGVDYNEA
101: AARLESIYKL SPATTTLVED DVEDGGSKAK VSRRRKRKES GEEKKVVVRN NVKKEKRMSL DKRIALKRNV QEKPVVASVD KKVTKRQQEE EKIERLVRDY
201: SASNDIVSLD WKKMKIPPVL SSTEHAWLFK LMQPMKALLE VKDVLQKSLG REPREAEIAG EINMTAGEVK KKIEIGRAAR NKLIKHNLRL VLFVMNKYFH
301: EFTNGPKFQD LCQAGMRGLI TAIDRFEPKR KFRLSTYGLF WIRHAIIRSM TTSNFTRVPF GLESVRVEIY KAKTELWFEM GRPPTEDEVV ERLKITPERY
401: REVLRAAKPV LSLNSKHSVT QEEFINGITD VDGVGANNSR QPALLRLALD DVLDSLKPKE SLVIRQRYGL DGKGDRTLGE IAGNLNISRE MVRKHEVKAL
501: MKLKHQARVD YLRQYIV

Arabidopsis Description

SIGERNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.