CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93555	Canola	plastid	93.31	94.94
CDY31138	Canola	plastid	87.99	89.53
CDX97496	Canola	plastid	87.31	89.14
AT1G08540.1	Thale cress	plastid	84.05	85.66
VIT_15s0024g00640.t01	Wine grape	plastid	65.01	65.91
KRH51354	Soybean	nucleus	56.09	65.4
KRH60664	Soybean	nucleus	59.18	61.17
GSMUA_Achr7P04860_001	Banana	nucleus	55.75	59.31
Solyc01g081490.2.1	Tomato	nucleus	60.89	57.91
PGSC0003DMT400079883	Potato	plastid	60.89	57.91
GSMUA_Achr7P17330_001	Banana	nucleus, plastid	53.86	57.3
Os11t0448400-02	Rice	nucleus	36.71	50.59
HORVU4Hr1G045100.1	Barley	nucleus	8.75	48.57
HORVU4Hr1G044910.10	Barley	nucleus	39.45	48.22
OQU83379	Sorghum	plastid	42.71	46.37
Zm00001d049160_P002	Maize	plastid	43.05	45.39
TraesCS4B01G163500.1	Wheat	plastid	42.02	44.87
TraesCS4A01G157100.1	Wheat	plastid	42.37	44.83
TraesCS4D01G154500.2	Wheat	plastid	42.37	43.95
EER95113	Sorghum	plastid	39.45	43.56
HORVU4Hr1G060200.1	Barley	plastid	40.65	43.25
Zm00001d028585_P001	Maize	plastid	38.77	42.8
TraesCS4B01G209300.1	Wheat	plastid	39.97	42.6
TraesCS4A01G095200.1	Wheat	plastid	39.97	42.52
Os03t0271100-01	Rice	mitochondrion	39.28	42.41
TraesCS4D01G210000.1	Wheat	plastid	39.79	42.34
CDY66142	Canola	nucleus	21.44	36.98
CDY18468	Canola	plastid	27.44	29.41
CDX79708	Canola	endoplasmic reticulum, extracellular	7.38	28.86
CDX91100	Canola	plastid	18.7	26.65
CDX85630	Canola	plastid	18.52	26.47
CDY09826	Canola	plastid	18.87	26.25
CDY52962	Canola	nucleus	20.75	25.21
CDY56127	Canola	nucleus	20.93	24.85
CDY19846	Canola	nucleus	19.73	23.57
CDX87140	Canola	plastid	20.24	23.46
CDX80416	Canola	nucleus	19.9	20.68
CDX76185	Canola	plastid	23.33	20.3
CDX88078	Canola	cytosol, mitochondrion, nucleus, vacuole	19.9	19.76
CDY13153	Canola	plastid	22.64	19.64
CDY59157	Canola	cytosol	0.34	2.44
CDX73516	Canola	cytosol	0.34	2.44
CDY54028	Canola	cytosol	0.34	2.44
CDX67575	Canola	cytosol	0.34	2.44

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	GO:A0A078E1P4	EnsemblPlants:CDX95052	ProteinID:CDX95052
ProteinID:CDX95052.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006352
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00100572001
InterPro:IPR036388	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PIRSF:PIRSF000767	PRINTS:PR00046
ScanProsite:PS00716	PANTHER:PTHR30603	PANTHER:PTHR30603:SF25	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2
InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659
SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI0004EAD296	InterPro:WH-like_DNA-bd_sf	SEG:seg	:

Description

BnaC05g06190D

Coordinates

chrLK031886:-:889057..892349

Molecular Weight (calculated)

65384.7 Da

IEP (calculated)

9.704

GRAVY (calculated)

-0.665

Length

583 amino acids

Sequence
(BLAST)

001: MSSCLLPNFK CQPDSFSIHF RTSYPVSKHS KGSVFFQPQC AVSTSPPLLT STLDVSKLTL PSFDTNSDSR TSDRQWNYTQ TIGPSTEAKY LEALASETLL
101: TSDEAVVAAA AAEALALARA ALKVAKDATL FSNTHNAKPS VSSSAPDKRS KWDQFTEKER AGILGHLAVS DTGVVSDRIT AHAPPECNKE PSDDLNPEKQ
201: DVEPLEEEEE ELVAVSSAVR STRQTERKAR RAKGLEKTAS GMQSSVKTGS SSRKKRVASQ EIDHNDPLRY LRMTTSSSKL LTAREEQQLS EGIQDLLKLE
301: RLQTELTERC GHQPTFGQWA SAAGVDQKTL RKRITHGTQC KDRMIKSNIR LVISIAKNYQ GAGMDFQDLV QEGCRGLVRG AEKFDATKGF KFSTYAHWWI
401: KQAVRKSLSD QSRMIRLPFH MVEATYRVKE ARKQLYSETG KQPKNEEVAE ATGLSMKRLM AVLLSPKPPR SLDQKIGINL NLKPSEVISD PEAETSEDIL
501: MKQFMREDLD KVLDSLGTRE KQVIRWRFGM EDGRMKTLQE IGETMGVSRE RVRQIESSAF RKLKNKKRNY HLQQYLVAQT KES

Best Arabidopsis Sequence Match ( AT1G08540.1 )
(BLAST)

001: MSSCLLPQFK CPPDSFSIHF RTSFCAPKHN KGSVFFQPQC AVSTSPALLT SMLDVAKLRL PSFDTDSDSL ISDRQWTYTR PDGPSTEAKY LEALASETLL
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS

Arabidopsis Description

SIGBRNA polymerase sigma factor sigB [Source:UniProtKB/Swiss-Prot;Acc:O22056]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.