Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G163500.1 | Wheat | plastid | 95.39 | 83.33 |
| Os11t0448400-02 | Rice | nucleus | 73.58 | 82.98 |
| TraesCS4A01G157100.1 | Wheat | plastid | 95.6 | 82.76 |
| TraesCS4D01G154500.2 | Wheat | plastid | 95.6 | 81.14 |
| HORVU4Hr1G045100.1 | Barley | nucleus | 17.61 | 80.0 |
| OQU83379 | Sorghum | plastid | 81.55 | 72.44 |
| Zm00001d049160_P002 | Maize | plastid | 81.13 | 69.98 |
| HORVU4Hr1G060200.1 | Barley | plastid | 65.2 | 56.75 |
| KRH51354 | Soybean | nucleus | 48.22 | 46.0 |
| GSMUA_Achr7P04860_001 | Banana | nucleus | 51.36 | 44.71 |
| GSMUA_Achr7P17330_001 | Banana | nucleus, plastid | 49.69 | 43.25 |
| KRH60664 | Soybean | nucleus | 50.52 | 42.73 |
| VIT_15s0024g00640.t01 | Wine grape | plastid | 49.9 | 41.39 |
| Bra030732.1-P | Field mustard | plastid | 48.43 | 40.53 |
| CDY31138 | Canola | plastid | 48.64 | 40.49 |
| AT1G08540.1 | Thale cress | plastid | 48.43 | 40.38 |
| Bra018617.1-P | Field mustard | plastid | 48.43 | 40.31 |
| CDX93555 | Canola | plastid | 48.22 | 40.14 |
| CDX97496 | Canola | plastid | 47.8 | 39.93 |
| CDX95052 | Canola | plastid | 48.22 | 39.45 |
| PGSC0003DMT400079883 | Potato | plastid | 50.31 | 39.15 |
| Solyc01g081490.2.1 | Tomato | nucleus | 50.31 | 39.15 |
| HORVU7Hr1G069520.2 | Barley | nucleus | 19.08 | 30.33 |
| HORVU5Hr1G125110.10 | Barley | plastid | 27.88 | 24.05 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.10.601.10 | MapMan:15.6.2.1 | UniProt:A0A287NXJ2 | GO:GO:0001053 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006352 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016987 | GO:GO:2000142 | EnsemblPlantsGene:HORVU4Hr1G044910 | EnsemblPlants:HORVU4Hr1G044910.10 | InterPro:IPR036388 |
| PFAM:PF04539 | PFAM:PF04542 | PFAM:PF04545 | PIRSF:PIRSF000767 | PRINTS:PR00046 | ScanProsite:PS00716 |
| PANTHER:PTHR30603 | PANTHER:PTHR30603:SF25 | InterPro:RNA_pol_sigma-70_dom | InterPro:RNA_pol_sigma70 | InterPro:RNA_pol_sigma70_r2 | InterPro:RNA_pol_sigma70_r3 |
| InterPro:RNA_pol_sigma70_r4 | InterPro:RNA_pol_sigma_SigB/C/D/F | InterPro:RNA_pol_sigma_r2 | InterPro:RNA_pol_sigma_r3/r4-like | SUPFAM:SSF88659 | SUPFAM:SSF88946 |
| TIGRFAMs:TIGR02937 | UniParc:UPI000B467B2B | InterPro:WH-like_DNA-bd_sf | SEG:seg | : | : |
Description
RNA polymerase sigma factor [Source:UniProtKB/TrEMBL;Acc:A0A287NXJ2]
Coordinates
chrchr4H:-:360057528..360097992
Molecular Weight (calculated)
53533.5 Da
IEP (calculated)
10.157
GRAVY (calculated)
-0.515
Length
477 amino acids
Sequence
(BLAST)
(BLAST)
001: PTFFERNFES TLASETVLNK EAVVTAAAAE AVALARAAAE AAQEVVHMVQ KSSSQPVFRK KGEVENYLAK EILRTEMLSS RAYEYSDGVL SGVLEPYGIP
101: SDEAELDDDK QDAENIAVKS ARQSERRARR TRATMKAAIT VRGSLKLVTS SKKKRSKGPS TMNPLGSLWK MTGRKLLTAK EEVELSNGIQ DLLKLEAIQG
201: ELAEYNGGQP TFPQWAAAAG TDENTLRKRL DHGIHCKNRM VTSNVRLVIS IAREFEGPGL ELYDLIQEGM QGLIRGAEKF DASKGFRFST YSHWWIKQAM
301: RKSVSEQTQI FRLPAHMVEA SYRVKECTKR LRRKLKRRPS NEEIAVDIGM PVKRVEAAVS LPKYSVSLDS KIGSTDMTYQ EVTADPSAET AEEMLNRMSM
401: KKDVHQALDT LSPRERQVVK LRFGINDGRI RTLQEIGNIM GVSRERIRQI ESGAFRKLRG KKKVKCLMDY LVPVGNW
101: SDEAELDDDK QDAENIAVKS ARQSERRARR TRATMKAAIT VRGSLKLVTS SKKKRSKGPS TMNPLGSLWK MTGRKLLTAK EEVELSNGIQ DLLKLEAIQG
201: ELAEYNGGQP TFPQWAAAAG TDENTLRKRL DHGIHCKNRM VTSNVRLVIS IAREFEGPGL ELYDLIQEGM QGLIRGAEKF DASKGFRFST YSHWWIKQAM
301: RKSVSEQTQI FRLPAHMVEA SYRVKECTKR LRRKLKRRPS NEEIAVDIGM PVKRVEAAVS LPKYSVSLDS KIGSTDMTYQ EVTADPSAET AEEMLNRMSM
401: KKDVHQALDT LSPRERQVVK LRFGINDGRI RTLQEIGNIM GVSRERIRQI ESGAFRKLRG KKKVKCLMDY LVPVGNW
001: MASFNSFPIP KQIVGSSSSS SSSTSRPRIL VRSSLTSSMT STNSMLVFVH PHPLIKHWLS LLRSDQTSFP IFVRIPMTSV VATRWSFLSS VKEESRIYQN
101: DSLKACGCAS VSPYTAQNNV YVELKDPKEN IGVGSAERSY SSRSMLQYNL LAKNLLALEE TFVALDSVRM ERDIMLQMGK LGAAELFKTC LSRYRGSSIT
201: SCLSDTTELV DTTPNQQVFV SSRRKVKKKA RRSSVTAENG DQSSLPIGLR TTWNNIDVPR VRRPPKYRKK RERISRNETE MSTGVKIVAD MERIRTQLEE
301: ESGKVASLSC WAAAAGMNEK LLMRNLHYGW YCRDELVKST RSLVLFLARN YRGLGIAHED LIQAGYVGVL QGAERFDHTR GYKFSTYVQY WIRKSMSTMV
401: SRHARGVHIP SSIIRTINHI QKARKTLKTS HGIKYAADEE IAKLTGHSVK KIRAANQCLK VVGSIDKKVG DCFTTKFLEF TPDTTMESPE EAVMRQSARR
501: DIHDLLEGLE PREKQVMVLR YGLQDYRPKS LEEIGKLLKV SKEWIRKIER RAMAKLRDQP NAEDLRYYLN Q
101: DSLKACGCAS VSPYTAQNNV YVELKDPKEN IGVGSAERSY SSRSMLQYNL LAKNLLALEE TFVALDSVRM ERDIMLQMGK LGAAELFKTC LSRYRGSSIT
201: SCLSDTTELV DTTPNQQVFV SSRRKVKKKA RRSSVTAENG DQSSLPIGLR TTWNNIDVPR VRRPPKYRKK RERISRNETE MSTGVKIVAD MERIRTQLEE
301: ESGKVASLSC WAAAAGMNEK LLMRNLHYGW YCRDELVKST RSLVLFLARN YRGLGIAHED LIQAGYVGVL QGAERFDHTR GYKFSTYVQY WIRKSMSTMV
401: SRHARGVHIP SSIIRTINHI QKARKTLKTS HGIKYAADEE IAKLTGHSVK KIRAANQCLK VVGSIDKKVG DCFTTKFLEF TPDTTMESPE EAVMRQSARR
501: DIHDLLEGLE PREKQVMVLR YGLQDYRPKS LEEIGKLLKV SKEWIRKIER RAMAKLRDQP NAEDLRYYLN Q
Arabidopsis Description
SIGCRNA polymerase sigma factor sigC [Source:UniProtKB/Swiss-Prot;Acc:O24621]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.