Factsheet for HORVU7Hr1G069520.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 1
nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0163400-01	Rice	nucleus	84.33	60.67
TraesCS7D01G292000.1	Wheat	plastid	92.33	54.21
TraesCS7A01G297900.2	Wheat	plastid	91.67	53.92
TraesCS7B01G184800.1	Wheat	nucleus, plastid	91.33	53.62
EES13412	Sorghum	plastid	86.0	51.6
Zm00001d049494_P001	Maize	plastid	86.33	51.39
Zm00001d024507_P001	Maize	plastid	69.67	46.44
GSMUA_Achr1P10700_001	Banana	nucleus	64.33	45.63
GSMUA_Achr11P...	Banana	nucleus	63.33	41.39
CDY52962	Canola	nucleus	61.33	38.33
CDY56127	Canola	nucleus	62.0	37.88
Bra008513.1-P	Field mustard	nucleus	62.0	37.8
KRH23963	Soybean	plastid	63.33	37.77
Solyc06g072710.2.1	Tomato	nucleus	63.33	37.62
PGSC0003DMT400069555	Potato	nucleus	63.0	37.43
KRH39837	Soybean	plastid	62.67	37.38
AT1G64860.1	Thale cress	nucleus	61.33	36.65
Solyc03g097320.2.1	Tomato	nucleus, plastid	61.0	35.95
VIT_16s0039g00660.t01	Wine grape	plastid	60.67	31.49
PGSC0003DMT400068109	Potato	nucleus	55.67	27.38
HORVU4Hr1G045100.1	Barley	nucleus	7.0	20.0
HORVU4Hr1G044910.10	Barley	nucleus	30.33	19.08
HORVU4Hr1G060200.1	Barley	plastid	29.67	16.24
HORVU5Hr1G125110.10	Barley	plastid	29.67	16.09

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	UniProt:A0A287WSL5	GO:GO:0003674	GO:GO:0003700
GO:GO:0006139	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:2000142	EnsemblPlantsGene:HORVU7Hr1G069520	EnsemblPlants:HORVU7Hr1G069520.2	InterPro:IPR036388
PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046	ScanProsite:PS00715	PANTHER:PTHR30603
PANTHER:PTHR30603:SF14	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4
InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI000B480F9F
InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr7H:+:372149808..372161811

Molecular Weight (calculated)

34109.0 Da

IEP (calculated)

9.433

GRAVY (calculated)

-0.354

Length

300 amino acids

Sequence
(BLAST)

001: TNAVKPARAG VNSLCVSLST CGLTEILGNE PSYKQMAQSL RISTPELRSR MRESFLAREV LTMSNIRLVI SIAQKYDKLG VELSDLIQGG LIGLLRGIEK
101: FDASRGFRIS TYVYWWIRQG VSRALADNSK TFRLPTYMHE RLIAIRAAKY ALEDQGVSPT TQNIAELLNI SEKKVHNATE AVNKALSLDQ QAFPSLNGLP
201: GDTLHSYIED QNVANDPWHG FEEWYLKEEV NNLLISNLTE RERHIIRLYH GIGKQCHTWE DISRQFGLSR ERVRQVGLIA MEKLKHAARR KKLDALLQDY

Best Arabidopsis Sequence Match ( AT1G64860.1 )
(BLAST)

001: MATAAVIGLN TGKRLLSSSF YHSDVTEKFL SVNDHCSSQY HIASTKSGIT AKKASNYSPS FPSSNRHTQS AKALKESVDV ASTEKPWLPN GTDKELEEEC
101: YDDDDLISHS VEAILLLQKS MLEKSWNLSF EKAVSSEYPG KGTIRKKKIP VITCSGISAR QRRIGAKKKT NMTHVKAVSD VSSGKQVRGY VKGVISEDVL
201: SHVEVVRLSK KIKSGLRLDD HKSRLKDRLG CEPSDEQLAV SLKISRAELQ AWLMECHLAR EKLAMSNVRL VMSIAQRYDN LGAEMSDLVQ GGLIGLLRGI
301: EKFDSSKGFR ISTYVYWWIR QGVSRALVDN SRTLRLPTHL HERLGLIRNA KLRLQEKGIT PSIDRIAESL NMSQKKVRNA TEAVSKVFSL DRDAFPSLNG
401: LPGETHHSYI ADTRLENNPW HGYDDLALKE EVSKLISATL GEREKEIIRL YYGLDKECLT WEDISKRIGL SRERVRQVGL VALEKLKHAA RKRKMEAMIL
501: KN

Arabidopsis Description

SIGARNA polymerase sigma factor sigA [Source:UniProtKB/Swiss-Prot;Acc:O24629]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.