Factsheet for PGSC0003DMT400069555

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g072710.2.1	Tomato	nucleus	97.23	97.23
CDY52962	Canola	nucleus	64.36	67.71
CDY56127	Canola	nucleus	65.35	67.21
Bra008513.1-P	Field mustard	nucleus	65.35	67.07
KRH23963	Soybean	plastid	66.73	67.0
KRH39837	Soybean	plastid	66.14	66.4
AT1G64860.1	Thale cress	nucleus	65.15	65.54
HORVU7Hr1G069520.2	Barley	nucleus	37.43	63.0
GSMUA_Achr1P10700_001	Banana	nucleus	52.67	62.88
GSMUA_Achr11P...	Banana	nucleus	55.25	60.78
VIT_16s0039g00660.t01	Wine grape	plastid	68.51	59.86
Os08t0163400-01	Rice	nucleus	47.92	58.03
PGSC0003DMT400068109	Potato	nucleus	69.5	57.54
EES13412	Sorghum	plastid	53.07	53.6
Zm00001d049494_P001	Maize	plastid	52.48	52.58
Zm00001d024507_P001	Maize	plastid	45.94	51.56
TraesCS7D01G292000.1	Wheat	plastid	51.49	50.88
TraesCS7B01G184800.1	Wheat	nucleus, plastid	51.29	50.68
TraesCS7A01G297900.2	Wheat	plastid	50.89	50.39
PGSC0003DMT400017455	Potato	nucleus	17.43	32.12
PGSC0003DMT400010456	Potato	nucleus	3.37	24.64
PGSC0003DMT400055506	Potato	nucleus, plastid	25.35	21.99
PGSC0003DMT400079883	Potato	plastid	25.15	20.72
PGSC0003DMT400023432	Potato	plastid	20.0	19.57
PGSC0003DMT400065483	Potato	mitochondrion	19.6	17.84

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.120.1810	EntrezGene:102585592	MapMan:15.6.2.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016987
GO:GO:2000142	InterPro:IPR036388	UniProt:M1CKN6	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545
EnsemblPlantsGene:PGSC0003DMG400027038	PGSC:PGSC0003DMG400027038	EnsemblPlants:PGSC0003DMT400069555	PRINTS:PR00046	ScanProsite:PS00715	PANTHER:PTHR30603
PANTHER:PTHR30603:SF14	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4
InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI000295D53B
InterPro:WH-like_DNA-bd_sf	RefSeq:XP_006347341.1	RefSeq:XP_006347342.1	SEG:seg	:	:

Description

Sigma factor [Source:PGSC_GENE;Acc:PGSC0003DMG400027038]

Coordinates

chr6:+:53436376..53441621

Molecular Weight (calculated)

57170.3 Da

IEP (calculated)

10.182

GRAVY (calculated)

-0.435

Length

505 amino acids

Sequence
(BLAST)

001: MAIAAVIGLY AGNRILSSSF YYSDLTEKLA CSGDHALICN PTWNVINAKK SSNYSTGYVS NRKKQSVKAV KEHVNIASNH SDVEPMVEMF KKLQNESFSE
101: EDSVEVLLLL QKSMLEKQWN LSAEKTLAAF PPNEKNCKKK MQITCSGTSA RRRRMDTRKR VQIPKTSAAA NSASKRLRSV VGPELQQNRL RGYMKGVVNQ
201: ELLTHKEVVQ LSKKIKFGLY LEEQKASLKE RLGCEPSDDQ LAVSLKMSLA DLRSTLMECS LAREKLAMSN VRLVMSIAQR YDSMGTEMAD LIQGGLIGLL
301: RGIEKFDHSR GFKISTYVYW WIRQGVSRAL VDNSRTLRLP IHLHERLSLI RNAKVKLKDN GITPSIEKIA ECLNMSQKKV RNATEASSKV FSLDREAYPS
401: LNGLPGATLH SYIADNRLEN NPWHGVDGWA LKDEVNNLIS STLRERERDI VRLYYGLDNE CLTWEDISRR IGLSRERVRQ VGLVALEKLK HAARKKQLDA
501: MLVKH

Best Arabidopsis Sequence Match ( AT1G64860.1 )
(BLAST)

001: MATAAVIGLN TGKRLLSSSF YHSDVTEKFL SVNDHCSSQY HIASTKSGIT AKKASNYSPS FPSSNRHTQS AKALKESVDV ASTEKPWLPN GTDKELEEEC
101: YDDDDLISHS VEAILLLQKS MLEKSWNLSF EKAVSSEYPG KGTIRKKKIP VITCSGISAR QRRIGAKKKT NMTHVKAVSD VSSGKQVRGY VKGVISEDVL
201: SHVEVVRLSK KIKSGLRLDD HKSRLKDRLG CEPSDEQLAV SLKISRAELQ AWLMECHLAR EKLAMSNVRL VMSIAQRYDN LGAEMSDLVQ GGLIGLLRGI
301: EKFDSSKGFR ISTYVYWWIR QGVSRALVDN SRTLRLPTHL HERLGLIRNA KLRLQEKGIT PSIDRIAESL NMSQKKVRNA TEAVSKVFSL DRDAFPSLNG
401: LPGETHHSYI ADTRLENNPW HGYDDLALKE EVSKLISATL GEREKEIIRL YYGLDKECLT WEDISKRIGL SRERVRQVGL VALEKLKHAA RKRKMEAMIL
501: KN

Arabidopsis Description

SIGARNA polymerase sigma factor sigA [Source:UniProtKB/Swiss-Prot;Acc:O24629]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.