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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 6
  • mitochondrion 1
  • nucleus 3
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:nucleus
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc03g007370.2.1 Tomato plastid 94.38 94.56
VIT_16s0050g02520.t01 Wine grape plastid 71.32 71.04
KRH53442 Soybean plastid 66.09 67.26
KRH18145 Soybean mitochondrion, nucleus 64.34 64.84
CDX87140 Canola plastid 63.18 64.81
KRH64502 Soybean plastid 65.12 64.74
KRH16520 Soybean mitochondrion, nucleus 63.76 64.26
GSMUA_Achr7P24590_001 Banana plastid 62.79 64.16
CDY19846 Canola nucleus 60.47 63.93
Bra026466.1-P Field mustard nucleus 59.88 63.58
AT5G24120.3 Thale cress nucleus 61.63 61.51
Bra009735.1-P Field mustard plastid 60.47 61.18
CDX80416 Canola nucleus 60.27 55.44
CDX88078 Canola cytosol, mitochondrion, nucleus, vacuole 60.27 52.98
Zm00001d039194_P001 Maize plastid 48.64 50.5
EES18781 Sorghum plastid 49.03 50.5
TraesCS1A01G426700.1 Wheat plastid 48.26 50.4
TraesCS1B01G461600.1 Wheat plastid 47.67 50.0
TraesCS1D01G436500.1 Wheat plastid 47.67 49.8
Os05t0586600-01 Rice plastid 30.04 43.66
PGSC0003DMT400010456 Potato nucleus 4.26 31.88
PGSC0003DMT400017455 Potato nucleus 13.18 24.82
PGSC0003DMT400079883 Potato plastid 24.22 20.39
PGSC0003DMT400069555 Potato nucleus 19.57 20.0
PGSC0003DMT400055506 Potato nucleus, plastid 21.9 19.42
PGSC0003DMT400065483 Potato mitochondrion 18.02 16.76
PGSC0003DMT400068109 Potato nucleus 18.99 16.07
Protein Annotations
Gene3D:1.10.10.10Gene3D:1.20.120.1810EntrezGene:102586954MapMan:15.6.2.1GO:GO:0001053GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0006091GO:GO:0006139GO:GO:0006352
GO:GO:0006355GO:GO:0006950GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009553GO:GO:0009628GO:GO:0009658GO:GO:0009987GO:GO:0010114GO:GO:0010207
GO:GO:0010218GO:GO:0015979GO:GO:0016043GO:GO:0016987GO:GO:0045893GO:GO:0071472
GO:GO:0071483GO:GO:2000142GO:GO:2001141InterPro:IPR036388UniProt:M1AIC4PFAM:PF04539
PFAM:PF04542PFAM:PF04545EnsemblPlantsGene:PGSC0003DMG400009072PGSC:PGSC0003DMG400009072EnsemblPlants:PGSC0003DMT400023432PRINTS:PR00046
PANTHER:PTHR30603PANTHER:PTHR30603:SF4InterPro:RNA_pol_sigma-70_domInterPro:RNA_pol_sigma70InterPro:RNA_pol_sigma70_r2InterPro:RNA_pol_sigma70_r3
InterPro:RNA_pol_sigma70_r4InterPro:RNA_pol_sigma_r2InterPro:RNA_pol_sigma_r3/r4-likeSUPFAM:SSF88659SUPFAM:SSF88946TIGRFAMs:TIGR02937
UniParc:UPI000296481FInterPro:WH-like_DNA-bd_sfRefSeq:XP_006350582.1SEG:seg::
Description
RNA polymerase sigma factor rpoD [Source:PGSC_GENE;Acc:PGSC0003DMG400009072]
Coordinates
chr3:-:48858782..48863468
Molecular Weight (calculated)
58971.5 Da
IEP (calculated)
10.554
GRAVY (calculated)
-0.596
Length
516 amino acids
Sequence
(BLAST)
001: MGVVTVSSSA SRSPLGLSSR FSTRLCPLKR PVIVSFKKDK TKNTTLIAPK ESISLSIETS KENEKRSRRV SKRSERVHAV AIEASPSTLE LDYSEAAAKL
101: ESIYKRSLET ASSNTEVQDH LVKRRPRTRK RIVEGDEEAK KEVADNVVKN RRKTSKRLNL DQRIALLKNK EGEMVASSER RKLKEDTEDE KIDKLVREYS
201: GATDLASLDW KKMKIPPVLP SSEHVWLFKL MQPMKAILQV KENLQNDLGR EPTDGEVAEA TNMDASELRK KLEVGRAARN KLIKHNLRLV LFVMNKYFQD
301: FANGSRFQDL CQAGVKGLIT AIDRFEPNRK FRLSTYGLFW IRHAIIRSMT TSSFTKVPFG LESIRVEIQK AKLELLFELQ RIPTDEEIIR RVGLSPERYH
401: EVMKVSKPVS SLHARNKTTQ EELINGITDV DGVDGDKRKQ PALLRLALDD VLDSLKPKES LVIRQRYGLD GKGDRTLGEI AGNLNISREM VRKHEVKALM
501: KLKHPTRVDY VRRYIF
Best Arabidopsis Sequence Match ( AT5G24120.1 )
(BLAST)
001: MGVVSISSSA ARSPLGLGND LLTHRSSLKK PSIVAFKADD SSNSALIIPP REQVLIPAEK HNEKKREVTR RKPCKTPKKP LSLEHNSAPS CSLGVDYNEA
101: AARLESIYKL SPATTTLVED DVEDGGSKAK VSRRRKRKES GEEKKVVVRN NVKKEKRMSL DKRIALKRNV QEKPVVASVD KKVTKRQQEE EKIERLVRDY
201: SASNDIVSLD WKKMKIPPVL SSTEHAWLFK LMQPMKALLE VKDVLQKSLG REPREAEIAG EINMTAGEVK KKIEIGRAAR NKLIKHNLRL VLFVMNKYFH
301: EFTNGPKFQD LCQAGMRGLI TAIDRFEPKR KFRLSTYGLF WIRHAIIRSM TTSNFTRVPF GLESVRVEIY KAKTELWFEM GRPPTEDEVV ERLKITPERY
401: REVLRAAKPV LSLNSKHSVT QEEFINGITD VDGVGANNSR QPALLRLALD DVLDSLKPKE SLVIRQRYGL DGKGDRTLGE IAGNLNISRE MVRKHEVKAL
501: MKLKHQARVD YLRQYIV
Arabidopsis Description
SIGERNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNX9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.