CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64502	Soybean	plastid	94.48	92.29
KRH18145	Soybean	mitochondrion, nucleus	74.75	74.02
KRH16520	Soybean	mitochondrion, nucleus	73.96	73.24
VIT_16s0050g02520.t01	Wine grape	plastid	69.03	67.57
PGSC0003DMT400023432	Potato	plastid	67.26	66.09
Solyc03g007370.2.1	Tomato	plastid	66.67	65.63
CDX87140	Canola	plastid	64.89	65.41
AT5G24120.3	Thale cress	nucleus	64.89	63.64
CDY19846	Canola	nucleus	61.14	63.52
Bra026466.1-P	Field mustard	nucleus	60.75	63.37
GSMUA_Achr7P24590_001	Banana	plastid	61.14	61.39
Bra009735.1-P	Field mustard	plastid	61.74	61.37
CDX80416	Canola	nucleus	61.54	55.62
CDX88078	Canola	cytosol, mitochondrion, nucleus, vacuole	61.54	53.15
EES18781	Sorghum	plastid	49.31	49.9
TraesCS1A01G426700.1	Wheat	plastid	47.93	49.19
Zm00001d039194_P001	Maize	plastid	47.93	48.89
TraesCS1D01G436500.1	Wheat	plastid	47.53	48.79
TraesCS1B01G461600.1	Wheat	plastid	47.34	48.78
Os05t0586600-01	Rice	plastid	30.18	43.1
KRH51354	Soybean	nucleus	21.5	21.8
KRH39837	Soybean	plastid	20.32	20.48
KRH67719	Soybean	nucleus	22.29	20.4
KRH23963	Soybean	plastid	20.12	20.28
KRH60664	Soybean	nucleus	22.09	19.86
KRG96007	Soybean	nucleus	21.7	19.86
KRH32532	Soybean	nucleus, plastid	21.5	18.96
KRH19920	Soybean	plastid	21.3	18.82
KRH04862	Soybean	mitochondrion	19.13	17.6
KRH16276	Soybean	golgi, mitochondrion, nucleus, plastid	12.43	15.25

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.120.1810	EntrezGene:100812580	MapMan:15.6.2.1	EMBL:ACUP02003463	ncoils:Coil
EnsemblPlantsGene:GLYMA_06G125700	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016987	GO:GO:2000142	UniProt:I1KAN0	InterPro:IPR036388
ProteinID:KRH53441.1	EnsemblPlants:KRH53442	ProteinID:KRH53442	ProteinID:KRH53442.1	PFAM:PF04539	PFAM:PF04542
PFAM:PF04545	PRINTS:PR00046	PANTHER:PTHR30603	PANTHER:PTHR30603:SF4	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70
InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659
SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI0002339B93	InterPro:WH-like_DNA-bd_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:10255309..10258885

Molecular Weight (calculated)

57853.0 Da

IEP (calculated)

10.507

GRAVY (calculated)

-0.587

Length

507 amino acids

Sequence
(BLAST)

001: MGVVTVSSSA ARTPLGLNTK FCNNRLKRPL IVAFKGDKHN DSALVATQEK IPVPVETAKK TQKKRIGKTN KLPKRESSPS SMDVDYNEAA AMLENLYKLS
101: PASDNAECID GKIKRVSRRG KKVVDESEEK ELKGDWVVRN QNKNKKPKRL NLDQRISLKN NKSGDEVIPT RKKRNVGNKI EKIEELIREY SVSTDFVSMD
201: WKRMRIPPVL SSSEHAWLFK LMQPMKALLQ VKEDLQQELT REPADGELAD ATNMSITQVR KAIDVGQAAR NKLIKHNLRL VLFVINKYFT DFASGPRFQD
301: LCQAGVKGLI TAIDRFEPNR RFRLSTYSLF WIRHAIIRSM TLSNFTRVPF GLESVRAEIQ KAKTELTFEL QRSPTEEEII ERVHISPERY HDVIKASKSI
401: LSLNSRHTTT QEEFINGIVD DDGVNGDNRK QPALLRLALD DVLDSLKPKE SLVIRQRFGL DGKGDRTLGE IAGNLNISRE MVRKHEVKAL MKLKHSARLD
501: YLRRYVV

Best Arabidopsis Sequence Match ( AT5G24120.1 )
(BLAST)

001: MGVVSISSSA ARSPLGLGND LLTHRSSLKK PSIVAFKADD SSNSALIIPP REQVLIPAEK HNEKKREVTR RKPCKTPKKP LSLEHNSAPS CSLGVDYNEA
101: AARLESIYKL SPATTTLVED DVEDGGSKAK VSRRRKRKES GEEKKVVVRN NVKKEKRMSL DKRIALKRNV QEKPVVASVD KKVTKRQQEE EKIERLVRDY
201: SASNDIVSLD WKKMKIPPVL SSTEHAWLFK LMQPMKALLE VKDVLQKSLG REPREAEIAG EINMTAGEVK KKIEIGRAAR NKLIKHNLRL VLFVMNKYFH
301: EFTNGPKFQD LCQAGMRGLI TAIDRFEPKR KFRLSTYGLF WIRHAIIRSM TTSNFTRVPF GLESVRVEIY KAKTELWFEM GRPPTEDEVV ERLKITPERY
401: REVLRAAKPV LSLNSKHSVT QEEFINGITD VDGVGANNSR QPALLRLALD DVLDSLKPKE SLVIRQRYGL DGKGDRTLGE IAGNLNISRE MVRKHEVKAL
501: MKLKHQARVD YLRQYIV

Arabidopsis Description

SIGERNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.